Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG747_RS14550 Genome accession   NZ_CP109559
Coordinates   3213932..3214612 (-) Length   226 a.a.
NCBI ID   WP_362087703.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01384     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3208932..3219612
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG747_RS14540 (OG747_14585) - 3211386..3212384 (+) 999 WP_405879746.1 hypothetical protein -
  OG747_RS14545 (OG747_14590) clpX 3212474..3213760 (-) 1287 WP_390927316.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG747_RS14550 (OG747_14595) clpP 3213932..3214612 (-) 681 WP_362087703.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG747_RS14555 (OG747_14600) clpP 3214750..3215355 (-) 606 WP_149513863.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG747_RS14560 (OG747_14605) tig 3215796..3217193 (-) 1398 WP_405879747.1 trigger factor -
  OG747_RS14575 (OG747_14620) - 3217938..3218132 (-) 195 WP_329368370.1 hypothetical protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 24981.44 Da        Isoelectric Point: 4.6351

>NTDB_id=678748 OG747_RS14550 WP_362087703.1 3213932..3214612(-) (clpP) [Streptomyces sp. NBC_01384]
MNDFPGSGLYARTQAEYTGPRAESRYVIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDP
DRDISVYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAILLAAGTPGKRMALPNARVLIHQPYSETGRGQVSD
LEIAANEILRMRAQLEEMLAKHSTTPIEKIREDIERDKILTAEDALAYGLIDQIISTRKMNNSAVV

Nucleotide


Download         Length: 681 bp        

>NTDB_id=678748 OG747_RS14550 WP_362087703.1 3213932..3214612(-) (clpP) [Streptomyces sp. NBC_01384]
GTGAACGACTTCCCCGGCAGCGGCCTCTACGCCCGCACGCAGGCCGAGTACACCGGTCCTCGTGCGGAGTCCCGCTACGT
CATCCCGCGCTTCGTCGAGCGCACCTCGCAGGGCGTGCGTGAGTACGACCCGTACGCGAAGCTGTTCGAGGAGCGCGTGA
TCTTCCTCGGCGTGCAGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGACCCC
GACCGTGACATCTCGGTCTACATCAACAGCCCCGGTGGCTCGTTCACGGCCCTCACGGCCATCTACGACACGATGCAGTT
CGTGAAGCCGGACATCCAGACGGTCTGCATGGGCCAGGCCGCCTCGGCCGCCGCGATCCTGCTGGCCGCCGGTACGCCGG
GCAAGCGCATGGCGCTCCCGAACGCCCGCGTGCTGATCCACCAGCCCTACAGCGAGACCGGCCGCGGCCAGGTCTCGGAC
CTCGAAATCGCGGCGAACGAGATCCTCCGGATGCGTGCGCAGCTGGAAGAGATGCTGGCCAAGCACTCGACCACGCCGAT
CGAGAAGATCCGCGAGGACATCGAGCGCGACAAGATCCTCACCGCTGAGGACGCGCTGGCGTACGGCCTGATCGACCAGA
TCATCTCCACCCGGAAGATGAACAATTCCGCGGTCGTCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(37-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

52.105

84.071

0.438
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

49.468

83.186

0.412
  clpP Streptococcus thermophilus LMD-9

46.154

86.283

0.398
  clpP Streptococcus thermophilus LMG 18311

46.154

86.283

0.398
  clpP Streptococcus mutans UA159

45.226

88.053

0.398
  clpP Lactococcus lactis subsp. cremoris KW2

45.226

88.053

0.398
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

44.221

88.053

0.389
  clpP Streptococcus pyogenes MGAS315

45.128

86.283

0.389
  clpP Streptococcus pyogenes JRS4

45.128

86.283

0.389
  clpP Streptococcus pneumoniae TIGR4

44.388

86.726

0.385
  clpP Streptococcus pneumoniae R6

44.388

86.726

0.385
  clpP Streptococcus pneumoniae Rx1

44.388

86.726

0.385
  clpP Streptococcus pneumoniae D39

44.388

86.726

0.385