Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG476_RS15460 Genome accession   NZ_CP109545
Coordinates   3396024..3396644 (-) Length   206 a.a.
NCBI ID   WP_323178394.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01396     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3391024..3401644
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG476_RS15445 (OG476_15415) - 3392619..3393581 (+) 963 WP_266514319.1 hypothetical protein -
  OG476_RS15450 (OG476_15420) clpX 3393825..3395114 (-) 1290 WP_266514322.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG476_RS15455 (OG476_15425) clpP 3395293..3395973 (-) 681 WP_323179373.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG476_RS15460 (OG476_15430) clpP 3396024..3396644 (-) 621 WP_323178394.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG476_RS15465 (OG476_15435) tig 3396925..3398322 (-) 1398 WP_266584627.1 trigger factor -
  OG476_RS15480 (OG476_15450) - 3398941..3399168 (-) 228 Protein_3071 cation transporter -
  OG476_RS15485 (OG476_15455) - 3399195..3400583 (+) 1389 WP_266840432.1 hypothetical protein -
  OG476_RS15490 (OG476_15460) - 3400650..3400913 (+) 264 Protein_3073 hypothetical protein -
  OG476_RS15495 (OG476_15465) - 3401081..3401272 (-) 192 WP_266584623.1 hypothetical protein -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 21823.73 Da        Isoelectric Point: 4.5852

>NTDB_id=678402 OG476_RS15460 WP_323178394.1 3396024..3396644(-) (clpP) [Streptomyces sp. NBC_01396]
MTNLMPSAAGEPSIGGGLGDQVYNRLLNERIIFLGQPVDDDIANKITAQLLLLAAADPDKDINLYINSPGGSITAGMAIY
DTMQFIKNDVVTIAMGLAASMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAERLLHTKKRMAELTAQHT
GQSFEQVTRDSDRDRWFDPEEAKEYGLIDDVITAAANMPGGGGTGA

Nucleotide


Download         Length: 621 bp        

>NTDB_id=678402 OG476_RS15460 WP_323178394.1 3396024..3396644(-) (clpP) [Streptomyces sp. NBC_01396]
GTGACGAATCTGATGCCCTCCGCCGCCGGCGAGCCTTCCATCGGTGGCGGCCTCGGCGACCAGGTCTACAACCGGCTGCT
CAACGAGCGGATCATCTTCCTCGGCCAGCCGGTCGACGACGACATCGCGAACAAGATCACCGCACAGTTGCTGCTCCTTG
CCGCTGCGGACCCCGACAAGGACATCAACCTCTACATCAACAGCCCCGGCGGCTCGATCACGGCCGGTATGGCGATCTAC
GACACCATGCAGTTCATCAAGAACGACGTGGTGACGATCGCGATGGGCCTCGCCGCCTCGATGGGCCAGTTCCTGCTCAG
CGCGGGCACCCCCGGCAAGCGCTTCGCGCTGCCGAACGCCGAGATCCTGATCCACCAGCCCTCCGCGGGCCTGGCTGGTT
CGGCCTCCGACATCAAGATCCACGCCGAGCGGCTGCTGCACACCAAGAAGCGCATGGCGGAGCTCACCGCCCAGCACACC
GGTCAGTCGTTCGAGCAGGTCACCCGCGACTCCGACCGCGACCGCTGGTTCGACCCCGAGGAGGCCAAGGAGTACGGCCT
CATCGACGACGTCATCACAGCGGCCGCCAACATGCCGGGCGGCGGCGGCACCGGGGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(20-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

56.021

92.718

0.519
  clpP Lactococcus lactis subsp. cremoris KW2

52.062

94.175

0.49
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

51.546

94.175

0.485
  clpP Streptococcus mutans UA159

50

93.204

0.466
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

52.747

88.35

0.466
  clpP Streptococcus pyogenes MGAS315

49.215

92.718

0.456
  clpP Streptococcus pyogenes JRS4

49.215

92.718

0.456
  clpP Streptococcus thermophilus LMG 18311

52.299

84.466

0.442
  clpP Streptococcus thermophilus LMD-9

52.299

84.466

0.442
  clpP Streptococcus pneumoniae Rx1

52.023

83.981

0.437
  clpP Streptococcus pneumoniae D39

52.023

83.981

0.437
  clpP Streptococcus pneumoniae R6

52.023

83.981

0.437
  clpP Streptococcus pneumoniae TIGR4

52.023

83.981

0.437