Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG476_RS15455 Genome accession   NZ_CP109545
Coordinates   3395293..3395973 (-) Length   226 a.a.
NCBI ID   WP_323179373.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01396     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3390293..3400973
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG476_RS15445 (OG476_15415) - 3392619..3393581 (+) 963 WP_266514319.1 hypothetical protein -
  OG476_RS15450 (OG476_15420) clpX 3393825..3395114 (-) 1290 WP_266514322.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG476_RS15455 (OG476_15425) clpP 3395293..3395973 (-) 681 WP_323179373.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG476_RS15460 (OG476_15430) clpP 3396024..3396644 (-) 621 WP_323178394.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG476_RS15465 (OG476_15435) tig 3396925..3398322 (-) 1398 WP_266584627.1 trigger factor -
  OG476_RS15480 (OG476_15450) - 3398941..3399168 (-) 228 Protein_3071 cation transporter -
  OG476_RS15485 (OG476_15455) - 3399195..3400583 (+) 1389 WP_266840432.1 hypothetical protein -
  OG476_RS15490 (OG476_15460) - 3400650..3400913 (+) 264 Protein_3073 hypothetical protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25037.51 Da        Isoelectric Point: 4.6548

>NTDB_id=678401 OG476_RS15455 WP_323179373.1 3395293..3395973(-) (clpP) [Streptomyces sp. NBC_01396]
MNDFPGSGLFDRTRAEYTGPAAESRYVIPRFVERTSQGIREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDP
DRDISVYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAILLAAGTPGKRMALPNARVLIHQPYSETGRGQVSD
LEIAANEILRMRAQLEEMLAKHSTTPIEKIREDIERDKILTAEEALSYGLIDQIISTRKMNNAAVR

Nucleotide


Download         Length: 681 bp        

>NTDB_id=678401 OG476_RS15455 WP_323179373.1 3395293..3395973(-) (clpP) [Streptomyces sp. NBC_01396]
GTGAACGACTTCCCCGGCAGCGGCCTGTTCGACCGCACACGCGCCGAGTACACGGGTCCCGCGGCGGAGTCCCGTTACGT
CATCCCGCGCTTCGTCGAGCGCACCTCGCAGGGCATCCGCGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCGTGA
TCTTCCTGGGCGTCCAGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGACCCC
GACCGGGACATCTCGGTCTACATCAACAGCCCCGGCGGCTCCTTCACCGCGCTGACTGCGATCTACGACACCATGCAGTT
CGTGAAGCCGGACATCCAGACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCCGCGATCCTGCTGGCCGCCGGTACGCCCG
GCAAGCGCATGGCGCTGCCGAATGCCCGCGTGCTGATCCACCAGCCCTACAGCGAGACGGGCCGCGGCCAGGTCTCCGAC
CTGGAGATCGCCGCCAACGAGATCCTGCGGATGCGCGCGCAGCTGGAGGAGATGCTGGCCAAGCACTCCACCACGCCGAT
CGAGAAGATCCGCGAGGACATCGAGCGCGACAAGATCCTCACGGCCGAGGAGGCGCTCTCGTACGGCCTGATCGACCAGA
TCATCTCCACCCGGAAGATGAACAACGCCGCCGTCCGCTAG

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(37-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

52.632

84.071

0.442
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50

83.186

0.416
  clpP Streptococcus mutans UA159

45.729

88.053

0.403
  clpP Streptococcus thermophilus LMD-9

46.667

86.283

0.403
  clpP Streptococcus thermophilus LMG 18311

46.667

86.283

0.403
  clpP Streptococcus pneumoniae D39

44.898

86.726

0.389
  clpP Streptococcus pneumoniae R6

44.898

86.726

0.389
  clpP Streptococcus pneumoniae TIGR4

44.898

86.726

0.389
  clpP Lactococcus lactis subsp. cremoris KW2

44.898

86.726

0.389
  clpP Streptococcus pneumoniae Rx1

44.898

86.726

0.389
  clpP Streptococcus pyogenes JRS4

45.128

86.283

0.389
  clpP Streptococcus pyogenes MGAS315

45.128

86.283

0.389
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.878

86.726

0.381