Detailed information NTG0678400

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: OG476_RS15450
• Genome accession: NZ_CP109545
• Coordinates: 3393825..3395114 (-)
• Length: 429 a.a.
• NCBI ID: WP_266514322.1
• Uniprot ID: -
• Organism: Streptomyces sp. NBC_01396
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 3388825..3400114

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OG476_RS15440 (OG476_15410)	-	3389857..3392481 (-)	2625	WP_266840434.1	valine--tRNA ligase	-
OG476_RS15445 (OG476_15415)	-	3392619..3393581 (+)	963	WP_266514319.1	hypothetical protein	-
OG476_RS15450 (OG476_15420)	clpX	3393825..3395114 (-)	1290	WP_266514322.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
OG476_RS15455 (OG476_15425)	clpP	3395293..3395973 (-)	681	WP_323179373.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OG476_RS15460 (OG476_15430)	clpP	3396024..3396644 (-)	621	WP_323178394.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OG476_RS15465 (OG476_15435)	tig	3396925..3398322 (-)	1398	WP_266584627.1	trigger factor	-
OG476_RS15480 (OG476_15450)	-	3398941..3399168 (-)	228	Protein_3071	cation transporter	-

Sequence

Protein

• Length: 429 a.a.
• Molecular weight: 46864.68 Da
• Isoelectric Point: 4.8160

>NTDB_id=678400 OG476_RS15450 WP_266514322.1 3393825..3395114(-) (clpX) [Streptomyces sp. NBC_01396]
MARIGDGGDLLKCSFCGKSQKQVKKLIAGPGVYICDECIDLCNEIIEEELAETSEVRWEELPKPREIYEFLEGYVVGQEP
AKKALSVAVYNHYKRVQAGENGGANGRDDAIELAKSNILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGED
VENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQ
IDTTNVLFIVGGAFSGLEKIIESRAGAKGIGFGATIRSKLELQSKDQFGDVMPEDLVKFGMIPEFIGRLPVITSVHNLDR
EALLQILIEPRNALVKQYQRLFELDGVELDFEREALEAIADQAILRQTGARGLRAIMEEVLMSVMYEVPSRKDVARVVVT
ADVVHSNVNPTLIPRDARNGRGPGEQKTA

Nucleotide

• Length: 1290 bp

>NTDB_id=678400 OG476_RS15450 WP_266514322.1 3393825..3395114(-) (clpX) [Streptomyces sp. NBC_01396]
GTGGCACGCATCGGTGACGGCGGCGATCTGCTCAAGTGCTCGTTCTGCGGCAAGAGCCAGAAGCAGGTCAAGAAGCTCAT
CGCAGGGCCTGGTGTGTACATCTGCGACGAGTGCATCGACCTCTGCAACGAGATCATCGAGGAAGAACTCGCGGAGACGA
GCGAGGTGCGCTGGGAGGAACTGCCCAAGCCCCGCGAGATCTACGAGTTCCTCGAGGGCTACGTCGTCGGCCAGGAGCCG
GCGAAGAAGGCCCTCTCCGTGGCGGTCTACAACCACTACAAGCGCGTCCAGGCCGGCGAGAACGGCGGCGCCAACGGCCG
TGACGACGCGATCGAGTTGGCGAAGTCCAACATCCTGCTGCTGGGCCCCACGGGCTCCGGCAAGACCCTCCTGGCCCAGA
CCCTGGCCCGCATGCTGAACGTCCCGTTCGCGATCGCGGACGCGACGGCGCTCACGGAGGCGGGTTACGTCGGCGAGGAC
GTCGAGAACATCCTGCTCAAGCTGATCCAGGCGGCGGACTACGACGTCAAGAAGGCCGAGACCGGGATCATCTACATCGA
CGAGATCGACAAGGTCGCGAGGAAGAGTGAGAACCCCTCGATCACTCGCGACGTGTCGGGCGAGGGCGTCCAGCAGGCCC
TGCTGAAGATCCTGGAGGGCACGACGGCCTCGGTCCCGCCCCAGGGCGGCCGCAAGCACCCCCACCAGGAGTTCATCCAG
ATCGACACGACGAACGTCCTGTTCATCGTGGGCGGTGCCTTCTCCGGCCTGGAGAAGATCATTGAGTCCCGGGCGGGCGC
CAAGGGCATCGGCTTCGGCGCGACGATCCGCTCGAAGCTGGAGCTGCAGTCCAAGGACCAGTTCGGGGACGTCATGCCCG
AGGACCTGGTCAAGTTCGGCATGATCCCCGAGTTCATCGGCCGCCTCCCGGTCATCACCTCGGTGCACAACCTGGACCGC
GAGGCCCTGCTCCAGATCCTCATCGAGCCGCGTAACGCGCTGGTGAAGCAGTACCAACGTCTCTTCGAACTCGACGGTGT
CGAGCTGGACTTCGAGCGCGAGGCCCTGGAGGCCATCGCCGACCAGGCCATCCTCCGCCAGACCGGCGCCCGCGGCCTGC
GCGCCATCATGGAGGAAGTCCTCATGTCCGTGATGTACGAGGTCCCGTCCCGCAAGGACGTCGCCCGAGTCGTCGTCACA
GCGGACGTCGTCCACTCGAACGTGAACCCGACCCTGATCCCGCGCGACGCGCGGAACGGGCGGGGGCCGGGGGAGCAGAA
GACGGCGTAG

Domains

Predicted by InterProScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (318-396)

• AAA domain (Cdc48 subfamily) (AAA_2) (115-312)

• ClpX C4-type zinc finger (zf-C4_ClpX) (11-48)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	62.935	93.706	0.59
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	54.015	95.804	0.517