Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   L2Y94_RS16060 Genome accession   NZ_CP095740
Coordinates   3571935..3573200 (+) Length   421 a.a.
NCBI ID   WP_283248496.1    Uniprot ID   -
Organism   Luteibacter aegosomatis strain 321     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3566935..3578200
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Y94_RS16045 (L2Y94_16045) - 3567347..3568516 (-) 1170 WP_247368916.1 hypothetical protein -
  L2Y94_RS16050 (L2Y94_16050) - 3568491..3569888 (-) 1398 WP_247375289.1 MBOAT family O-acyltransferase -
  L2Y94_RS16055 (L2Y94_16055) pilB 3570068..3571804 (+) 1737 WP_247368919.1 type IV-A pilus assembly ATPase PilB Machinery gene
  L2Y94_RS16060 (L2Y94_16060) pilC 3571935..3573200 (+) 1266 WP_283248496.1 type II secretion system F family protein Machinery gene
  L2Y94_RS16065 (L2Y94_16065) pilD 3573273..3574142 (+) 870 WP_247368922.1 A24 family peptidase Machinery gene
  L2Y94_RS16070 (L2Y94_16070) coaE 3574139..3574744 (+) 606 WP_247368939.1 dephospho-CoA kinase -
  L2Y94_RS16075 (L2Y94_16075) - 3574858..3576108 (-) 1251 WP_247368955.1 bifunctional diguanylate cyclase/phosphodiesterase -
  L2Y94_RS16080 (L2Y94_16080) - 3576105..3577322 (-) 1218 WP_247368973.1 HD-GYP domain-containing protein -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 45832.81 Da        Isoelectric Point: 10.0431

>NTDB_id=677965 L2Y94_RS16060 WP_283248496.1 3571935..3573200(+) (pilC) [Luteibacter aegosomatis strain 321]
MALATAKQNTRAVGAARAEVSKLTMYDWSALDKRGKRMTGEMQAKNAALVKAELRRQGMNPQTVREKSKPLFGSSGSKVK
PRDVAIFSRQIATMMASGVPMVQAFDIIAGGQKNVRFKKILTDVKTNIEGGASLHEALGQYPVQFDELYRNLVHAGESAG
VLDTILDTVATYKERTEAIKGKIKKALFYPAMVMVVAFLVTMILLLFVVPVFQQTFKDAGADLPVPTLIVVKASEFAQSY
WWLMLAVIIGAGVAFVMAKNRSPKFAHFLDRLSLRIPVIGNVLRQSALARFARTLGVTFQAGVPLVEALEAVSGATGSIV
YGEAVLRMRDDVSVGHQLQLAMRQTDLFPNMVVQMTAIGEESGSLDSMLFKVAEFYEEEVNNAVDTLSSLLEPFIMVILG
GLVGGMVISLYLPIFKIAGTT

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=677965 L2Y94_RS16060 WP_283248496.1 3571935..3573200(+) (pilC) [Luteibacter aegosomatis strain 321]
ATGGCTCTCGCCACCGCCAAACAGAACACCCGGGCCGTGGGCGCCGCGCGAGCGGAAGTGTCCAAGCTCACCATGTACGA
CTGGAGCGCCCTGGACAAGCGCGGCAAGCGCATGACCGGCGAGATGCAGGCCAAGAACGCCGCTTTGGTGAAGGCCGAGC
TGCGCCGCCAGGGCATGAACCCGCAGACGGTCCGCGAGAAGTCCAAGCCCCTGTTCGGCTCCAGCGGCTCCAAGGTGAAG
CCGCGCGACGTGGCCATCTTCAGCCGGCAGATCGCCACGATGATGGCCTCGGGCGTGCCGATGGTGCAGGCCTTCGACAT
CATCGCCGGCGGCCAGAAGAACGTCCGCTTCAAGAAGATCCTCACCGACGTCAAGACCAACATCGAGGGCGGCGCCTCGC
TGCACGAGGCCCTGGGCCAGTACCCGGTGCAGTTCGACGAGCTGTACCGCAACCTCGTCCACGCGGGCGAATCGGCCGGC
GTGCTCGATACCATCCTCGATACCGTGGCCACCTACAAGGAGCGTACCGAGGCGATCAAGGGCAAGATCAAGAAGGCCCT
GTTCTACCCGGCCATGGTGATGGTCGTGGCCTTCCTGGTCACGATGATCCTGCTGCTCTTCGTGGTGCCGGTGTTCCAGC
AGACCTTCAAGGACGCCGGTGCCGACCTGCCGGTGCCCACCCTCATCGTGGTGAAGGCCTCGGAATTCGCGCAGTCGTAC
TGGTGGCTGATGCTCGCGGTCATCATCGGTGCCGGCGTGGCCTTCGTCATGGCGAAGAACCGTTCGCCGAAATTCGCCCA
TTTCCTCGATCGCCTGTCGCTGCGCATCCCGGTCATCGGCAACGTGCTGCGCCAGTCGGCCTTGGCCCGCTTCGCCCGTA
CGTTGGGCGTGACCTTCCAGGCCGGCGTGCCCCTGGTGGAAGCCCTCGAGGCCGTCTCGGGCGCCACCGGCAGCATCGTC
TACGGCGAGGCCGTACTGCGCATGCGCGACGACGTCTCGGTGGGCCACCAGCTCCAGCTCGCGATGCGCCAGACCGACCT
CTTCCCGAACATGGTGGTGCAGATGACCGCCATCGGCGAGGAATCCGGCTCGCTCGACTCGATGCTGTTCAAGGTGGCGG
AGTTCTACGAGGAAGAAGTCAACAACGCGGTGGATACGCTCAGCAGCCTGCTCGAGCCGTTCATCATGGTGATCCTCGGC
GGCCTCGTGGGCGGCATGGTCATCTCGCTCTACCTGCCGATCTTCAAGATCGCCGGTACGACGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(87-210)

Type II secretion system (T2SS), protein F (T2SSF)

(291-413)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

54.684

93.824

0.513
  pilC Pseudomonas stutzeri DSM 10701

53.535

94.062

0.504
  pilC Acinetobacter baylyi ADP1

50

94.062

0.47
  pilC Acinetobacter baumannii D1279779

50.127

93.349

0.468
  pilG Neisseria gonorrhoeae MS11

41.775

90.974

0.38
  pilG Neisseria meningitidis 44/76-A

41.514

90.974

0.378
  pilC Thermus thermophilus HB27

37.685

96.437

0.363
  pilC Vibrio cholerae strain A1552

38.287

94.299

0.361