Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   L2Y94_RS16065 Genome accession   NZ_CP095740
Coordinates   3573273..3574142 (+) Length   289 a.a.
NCBI ID   WP_247368922.1    Uniprot ID   -
Organism   Luteibacter aegosomatis strain 321     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3568273..3579142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Y94_RS16050 (L2Y94_16050) - 3568491..3569888 (-) 1398 WP_247375289.1 MBOAT family O-acyltransferase -
  L2Y94_RS16055 (L2Y94_16055) pilB 3570068..3571804 (+) 1737 WP_247368919.1 type IV-A pilus assembly ATPase PilB Machinery gene
  L2Y94_RS16060 (L2Y94_16060) pilC 3571935..3573200 (+) 1266 WP_283248496.1 type II secretion system F family protein Machinery gene
  L2Y94_RS16065 (L2Y94_16065) pilD 3573273..3574142 (+) 870 WP_247368922.1 A24 family peptidase Machinery gene
  L2Y94_RS16070 (L2Y94_16070) coaE 3574139..3574744 (+) 606 WP_247368939.1 dephospho-CoA kinase -
  L2Y94_RS16075 (L2Y94_16075) - 3574858..3576108 (-) 1251 WP_247368955.1 bifunctional diguanylate cyclase/phosphodiesterase -
  L2Y94_RS16080 (L2Y94_16080) - 3576105..3577322 (-) 1218 WP_247368973.1 HD-GYP domain-containing protein -
  L2Y94_RS16085 (L2Y94_16085) msrA 3577568..3578233 (+) 666 WP_247368987.1 peptide-methionine (S)-S-oxide reductase MsrA -

Sequence

Protein


Download         Length: 289 a.a.        Molecular weight: 31778.82 Da        Isoelectric Point: 8.0308

>NTDB_id=677966 L2Y94_RS16065 WP_247368922.1 3573273..3574142(+) (pilD) [Luteibacter aegosomatis strain 321]
MPDLPLSLWIAFATVFGLLVGSFLNVVILRTPLRMQWEWRRQAREVLELPEVDEPKPPGVALEPSHCPHCKHRLAVRDNI
PLFGWLFLRGRCRYCGERISAQYPLVEAIAGVASALVVWRFGIGAGTLAALLFTYLLIALSGIDARTQLLPDELNYPLLW
IGLGLTLVPAWQPLPVEPSSAILAALVGYLSLWSIYWLFKLLTGKEGMGHGDFKLLAALGAWMGPTALLPIVLLSSLIGA
IVGGTLMVLRGRDRDVPMPFGPYIAAAGWVWLMCGDTLLNGYLRLTGMQ

Nucleotide


Download         Length: 870 bp        

>NTDB_id=677966 L2Y94_RS16065 WP_247368922.1 3573273..3574142(+) (pilD) [Luteibacter aegosomatis strain 321]
ATGCCGGATCTACCGCTTTCCCTCTGGATCGCCTTCGCCACCGTCTTCGGCCTGCTCGTGGGCAGCTTCCTCAACGTCGT
GATCCTGCGCACCCCGCTGCGCATGCAATGGGAATGGCGCCGCCAGGCCCGCGAGGTGCTCGAGCTGCCCGAGGTCGACG
AGCCGAAGCCGCCCGGCGTGGCGCTCGAACCCTCGCACTGCCCGCACTGCAAGCACCGGCTGGCGGTACGCGACAACATC
CCCCTGTTCGGTTGGCTGTTCCTCCGTGGGCGCTGCCGGTACTGCGGTGAACGCATTTCGGCGCAGTATCCGCTCGTGGA
GGCGATCGCGGGCGTGGCCAGCGCGCTGGTGGTCTGGCGCTTCGGCATCGGCGCGGGCACGCTCGCGGCCCTGCTGTTCA
CCTATCTGCTGATCGCCCTGTCGGGCATCGATGCCCGCACGCAGTTGCTGCCCGACGAACTCAACTATCCCCTGCTGTGG
ATCGGCCTGGGCCTCACGCTCGTTCCCGCGTGGCAGCCCCTGCCGGTGGAGCCGTCCTCGGCGATCCTGGCCGCGCTCGT
CGGCTACCTCAGCCTGTGGAGCATCTACTGGCTGTTCAAGCTGCTCACCGGCAAGGAAGGCATGGGCCATGGCGATTTCA
AGCTGCTCGCCGCCCTGGGCGCATGGATGGGGCCGACGGCCCTGCTTCCCATCGTGTTGCTGTCGTCGCTGATCGGCGCG
ATCGTGGGCGGCACGCTGATGGTTCTGCGCGGCCGTGACCGTGACGTGCCGATGCCTTTCGGCCCGTATATCGCCGCGGC
CGGCTGGGTCTGGCTGATGTGCGGAGACACCCTCTTGAACGGCTACCTGCGGCTGACGGGGATGCAATGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(15-121)

Type IV leader peptidase family (Peptidase_A24)

(132-243)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

50.73

94.81

0.481
  pilD Acinetobacter nosocomialis M2

47.67

96.54

0.46
  pilD Vibrio campbellii strain DS40M4

48.014

95.848

0.46
  pilD Acinetobacter baumannii D1279779

46.953

96.54

0.453
  pilD Neisseria gonorrhoeae MS11

44.074

93.426

0.412