Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   MXM90_RS01645 Genome accession   NZ_CP095737
Coordinates   325150..325539 (+) Length   129 a.a.
NCBI ID   WP_141347676.1    Uniprot ID   -
Organism   Lactococcus lactis strain JNU 534     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 325150..328517 325150..325539 within 0


Gene organization within MGE regions


Location: 325150..328517
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MXM90_RS01645 (MXM90_01645) ssbB 325150..325539 (+) 390 WP_141347676.1 single-stranded DNA-binding protein Machinery gene
  MXM90_RS01650 (MXM90_01650) groES 325659..325943 (+) 285 WP_003131589.1 co-chaperone GroES -
  MXM90_RS01655 (MXM90_01655) groL 326031..327659 (+) 1629 WP_003131585.1 chaperonin GroEL -
  MXM90_RS01660 (MXM90_01660) - 327705..328517 (-) 813 WP_003131583.1 MBL fold metallo-hydrolase -

Sequence

Protein


Download         Length: 129 a.a.        Molecular weight: 14642.75 Da        Isoelectric Point: 9.2955

>NTDB_id=677909 MXM90_RS01645 WP_141347676.1 325150..325539(+) (ssbB) [Lactococcus lactis strain JNU 534]
MNKTMLIGRLTSAPEISKTTNDKSYVRVTLAVNRRFKNEKGEREADFISIIIWGKSAETLVSYAKKGSLISIEGEIRTRN
YTDKQNQKHYVTVILGLSYDLLESRATIALRESAIKTEETLLDAEELPF

Nucleotide


Download         Length: 390 bp        

>NTDB_id=677909 MXM90_RS01645 WP_141347676.1 325150..325539(+) (ssbB) [Lactococcus lactis strain JNU 534]
ATGAATAAAACCATGTTAATTGGACGCTTAACCAGTGCGCCAGAAATTTCAAAAACAACAAATGATAAATCATATGTCCG
TGTGACCTTGGCAGTCAATCGCCGTTTCAAAAATGAAAAAGGAGAACGAGAGGCAGATTTTATTTCAATTATTATTTGGG
GAAAATCTGCAGAAACTTTAGTTTCTTACGCAAAAAAAGGAAGTCTTATTTCAATTGAAGGAGAAATTAGAACTAGAAAT
TATACGGATAAGCAAAATCAAAAACATTATGTCACAGTAATCTTAGGACTGAGTTATGATTTACTTGAAAGTAGGGCAAC
AATCGCTTTACGAGAAAGCGCTATAAAGACTGAAGAAACCTTACTTGATGCGGAAGAACTCCCTTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-95)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Lactococcus lactis subsp. cremoris KW2

89.922

100

0.899
  ssbB Streptococcus sobrinus strain NIDR 6715-7

60

100

0.605
  ssbB/cilA Streptococcus pneumoniae TIGR4

56.154

100

0.566
  ssbB/cilA Streptococcus pneumoniae Rx1

55.385

100

0.558
  ssbB/cilA Streptococcus pneumoniae D39

55.385

100

0.558
  ssbB/cilA Streptococcus pneumoniae R6

55.385

100

0.558
  ssbB/cilA Streptococcus mitis NCTC 12261

55.385

100

0.558
  ssbB/cilA Streptococcus mitis SK321

55.385

100

0.558
  ssbA Streptococcus mutans UA159

54.615

100

0.55
  ssb Latilactobacillus sakei subsp. sakei 23K

42.857

86.822

0.372