NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	OG207_RS28280	Genome accession	NZ_CP109487
Coordinates	6258346..6259011 (+)	Length	221 a.a.
NCBI ID	WP_150257432.1	Uniprot ID	-
Organism	Streptomyces sp. NBC_01439
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 6253346..6264011

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OG207_RS28245 (OG207_28265)	-	6253471..6253920 (-)	450	WP_329102063.1	DUF3592 domain-containing protein	-
OG207_RS28250 (OG207_28270)	-	6254149..6254730 (+)	582	WP_329102065.1	TIGR04222 domain-containing membrane protein	-
OG207_RS28255 (OG207_28275)	-	6254759..6255304 (-)	546	WP_329102066.1	GNAT family N-acetyltransferase	-
OG207_RS28270 (OG207_28290)	tig	6256012..6257400 (+)	1389	WP_329102068.1	trigger factor	-
OG207_RS28275 (OG207_28295)	clpP	6257682..6258299 (+)	618	WP_329102070.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OG207_RS28280 (OG207_28300)	clpP	6258346..6259011 (+)	666	WP_150257432.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OG207_RS28285 (OG207_28305)	clpX	6259165..6260451 (+)	1287	WP_030008569.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
OG207_RS28290 (OG207_28310)	-	6260553..6261548 (-)	996	WP_329102072.1	hypothetical protein	-

Sequence

Protein

Download Length: 221 a.a. Molecular weight: 24397.71 Da Isoelectric Point: 4.6747

                                >NTDB_id=677593 OG207_RS28280 WP_150257432.1 6258346..6259011(+) (clpP) [Streptomyces sp. NBC_01439]

MVNTQMQNNFSASGLYTGPQVDNRYVIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDPD

RDISIYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLIHQPSGGTGREQLSDL

EIAANEILRMRDQLETMLAKHSTTPIEKIRDDIERDKILTAEDALAYGLIDQIVSTRKNSH

Nucleotide

Download Length: 666 bp

                                >NTDB_id=677593 OG207_RS28280 WP_150257432.1 6258346..6259011(+) (clpP) [Streptomyces sp. NBC_01439]

ATGGTGAACACCCAGATGCAGAACAACTTCTCCGCGAGCGGCCTCTACACCGGCCCGCAGGTGGACAACCGCTACGTCAT

CCCGCGCTTCGTCGAGCGCACCTCGCAGGGCGTGCGCGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCGTGATCT

TCCTCGGCGTGCAGATCGACGACGCGTCAGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGACCCGGAC

CGCGACATCTCCATCTACATCAACAGCCCCGGTGGCTCCTTCACCGCGCTGACGGCGATCTACGACACGATGCAGTTCGT

GAAGCCGGACATCCAGACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCCGCGGTCCTGCTGGCCGCCGGTACCCCCGGCA

AGCGCATGGCCCTGCCGAACGCCCGCGTGCTGATCCACCAGCCCTCCGGTGGCACCGGCCGCGAGCAGCTCTCCGACCTG

GAGATCGCGGCCAACGAGATCCTGCGCATGCGCGACCAGCTGGAGACCATGCTGGCCAAGCACTCGACGACGCCGATCGA

GAAGATCCGCGACGACATCGAGCGCGACAAGATCCTGACGGCCGAGGACGCCCTCGCGTACGGCCTGATCGACCAGATCG

TCTCGACCCGCAAGAACTCCCACTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(36-216)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	53.158	85.973	0.457
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	50	85.068	0.425
clpP	Streptococcus thermophilus LMD-9	46.392	87.783	0.407
clpP	Streptococcus thermophilus LMG 18311	46.392	87.783	0.407
clpP	Streptococcus pyogenes MGAS315	47.368	85.973	0.407
clpP	Streptococcus pyogenes JRS4	47.368	85.973	0.407
clpP	Streptococcus mutans UA159	46.842	85.973	0.403
clpP	Streptococcus pneumoniae Rx1	46.073	86.425	0.398
clpP	Streptococcus pneumoniae D39	46.073	86.425	0.398
clpP	Streptococcus pneumoniae TIGR4	46.073	86.425	0.398
clpP	Streptococcus pneumoniae R6	46.073	86.425	0.398
clpP	Lactococcus lactis subsp. cremoris KW2	45.55	86.425	0.394
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	44.503	86.425	0.385

Detailed information NTG0677593