NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	OG207_RS28275	Genome accession	NZ_CP109487
Coordinates	6257682..6258299 (+)	Length	205 a.a.
NCBI ID	WP_329102070.1	Uniprot ID	-
Organism	Streptomyces sp. NBC_01439
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 6252682..6263299

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OG207_RS28240 (OG207_28260)	-	6253190..6253384 (+)	195	WP_030008564.1	membrane protein	-
OG207_RS28245 (OG207_28265)	-	6253471..6253920 (-)	450	WP_329102063.1	DUF3592 domain-containing protein	-
OG207_RS28250 (OG207_28270)	-	6254149..6254730 (+)	582	WP_329102065.1	TIGR04222 domain-containing membrane protein	-
OG207_RS28255 (OG207_28275)	-	6254759..6255304 (-)	546	WP_329102066.1	GNAT family N-acetyltransferase	-
OG207_RS28270 (OG207_28290)	tig	6256012..6257400 (+)	1389	WP_329102068.1	trigger factor	-
OG207_RS28275 (OG207_28295)	clpP	6257682..6258299 (+)	618	WP_329102070.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OG207_RS28280 (OG207_28300)	clpP	6258346..6259011 (+)	666	WP_150257432.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OG207_RS28285 (OG207_28305)	clpX	6259165..6260451 (+)	1287	WP_030008569.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
OG207_RS28290 (OG207_28310)	-	6260553..6261548 (-)	996	WP_329102072.1	hypothetical protein	-

Sequence

Protein

Download Length: 205 a.a. Molecular weight: 21699.65 Da Isoelectric Point: 4.6752

                                >NTDB_id=677592 OG207_RS28275 WP_329102070.1 6257682..6258299(+) (clpP) [Streptomyces sp. NBC_01439]

MTNLKPYAAGEPSIGGGLGDHVYNRLLGERIIFLGQQVDDEIANKITAQLLLLAAEPEKDIFLYINSPGGSVTAGMAVYD

TMQYIPNDVVTIGMGMAASMGQFLLTGGAKGKRFALPNTDVLMHQGSAGIGGTASDIKIQAQYLLRTKQRMAEITAFHSG

QSVEAIIRDGDRDRWFTAEEAKEYGLIDDIMSAASNVPGGGGTGA

Nucleotide

Download Length: 618 bp

                                >NTDB_id=677592 OG207_RS28275 WP_329102070.1 6257682..6258299(+) (clpP) [Streptomyces sp. NBC_01439]

GTGACGAATCTGAAGCCTTACGCCGCGGGTGAGCCGTCCATCGGTGGCGGCCTCGGCGACCATGTCTACAACCGGCTGCT

CGGCGAGCGCATCATCTTCCTCGGTCAGCAGGTCGACGACGAGATCGCGAACAAGATCACCGCGCAGCTCCTGCTCCTGG

CCGCCGAGCCGGAGAAGGACATCTTCCTCTACATCAACAGCCCCGGTGGCTCGGTGACGGCCGGCATGGCCGTCTACGAC

ACCATGCAGTACATCCCGAACGACGTCGTCACCATCGGCATGGGCATGGCGGCCTCCATGGGCCAGTTCCTGCTCACCGG

CGGCGCCAAGGGCAAGCGCTTCGCCCTGCCGAACACCGACGTCCTGATGCACCAGGGCTCCGCCGGCATCGGCGGCACCG

CCTCCGACATCAAGATCCAGGCCCAGTACCTGCTGCGCACCAAGCAGCGCATGGCCGAGATCACCGCGTTCCACTCGGGT

CAGTCCGTCGAGGCGATCATCCGTGACGGTGACCGCGACCGCTGGTTCACCGCCGAGGAGGCCAAGGAGTACGGCCTCAT

CGACGACATCATGTCGGCCGCGTCCAACGTGCCGGGCGGCGGCGGCACCGGGGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(21-192)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	53.927	93.171	0.502
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	51.579	92.683	0.478
clpP	Lactococcus lactis subsp. cremoris KW2	50.532	91.707	0.463
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	50	91.707	0.459
clpP	Streptococcus pneumoniae TIGR4	50.847	86.341	0.439
clpP	Streptococcus pneumoniae Rx1	50.847	86.341	0.439
clpP	Streptococcus pneumoniae D39	50.847	86.341	0.439
clpP	Streptococcus pneumoniae R6	50.847	86.341	0.439
clpP	Streptococcus mutans UA159	51.445	84.39	0.434
clpP	Streptococcus thermophilus LMD-9	50	84.878	0.424
clpP	Streptococcus thermophilus LMG 18311	50	84.878	0.424
clpP	Streptococcus pyogenes JRS4	49.711	84.39	0.42
clpP	Streptococcus pyogenes MGAS315	49.711	84.39	0.42

Detailed information NTG0677592