Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MUG87_RS01225 Genome accession   NZ_CP095462
Coordinates   236693..237031 (+) Length   112 a.a.
NCBI ID   WP_247084789.1    Uniprot ID   -
Organism   Ectobacillus sp. JY-23     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 231693..242031
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUG87_RS01200 (MUG87_01200) - 232006..232358 (-) 353 Protein_244 hypothetical protein -
  MUG87_RS01205 (MUG87_01205) - 232501..233142 (+) 642 WP_247084781.1 HD domain-containing protein -
  MUG87_RS01210 (MUG87_01210) - 233139..235028 (+) 1890 WP_247084783.1 ABC-F family ATP-binding cassette domain-containing protein -
  MUG87_RS01215 (MUG87_01215) - 235089..235820 (+) 732 WP_247084785.1 Bax inhibitor-1/YccA family protein -
  MUG87_RS01220 (MUG87_01220) - 235954..236457 (-) 504 WP_247084787.1 hypothetical protein -
  MUG87_RS01225 (MUG87_01225) ssbA 236693..237031 (+) 339 WP_247084789.1 single-stranded DNA-binding protein Machinery gene
  MUG87_RS01230 (MUG87_01230) - 237090..238214 (+) 1125 WP_247084791.1 conserved virulence factor C family protein -
  MUG87_RS01235 (MUG87_01235) - 238273..238659 (+) 387 WP_247084793.1 thiol-disulfide oxidoreductase DCC family protein -
  MUG87_RS01240 (MUG87_01240) - 238720..239157 (+) 438 WP_124564589.1 BrxA/BrxB family bacilliredoxin -
  MUG87_RS01245 (MUG87_01245) - 239197..239970 (+) 774 WP_247084795.1 class I SAM-dependent methyltransferase -
  MUG87_RS01250 (MUG87_01250) argS 240285..241967 (+) 1683 WP_247084797.1 arginine--tRNA ligase -

Sequence

Protein


Download         Length: 112 a.a.        Molecular weight: 13002.04 Da        Isoelectric Point: 10.4053

>NTDB_id=676942 MUG87_RS01225 WP_247084789.1 236693..237031(+) (ssbA) [Ectobacillus sp. JY-23]
MMNRVVLIGRLTKDPELLYTKQGIAYMKVRIAVSRGYRNSQGEQETDFIDCNVWRKMAENVSLYCKKGALIGISGRIRTS
SFENEQGKRMYRTEITAENVSFLERKKIQTSR

Nucleotide


Download         Length: 339 bp        

>NTDB_id=676942 MUG87_RS01225 WP_247084789.1 236693..237031(+) (ssbA) [Ectobacillus sp. JY-23]
ATGATGAATCGTGTCGTGTTAATTGGTCGTCTTACGAAGGACCCGGAACTGCTGTATACAAAGCAAGGGATTGCATATAT
GAAGGTACGTATTGCAGTGTCTCGCGGGTATCGCAATAGCCAAGGAGAGCAAGAGACGGATTTTATTGATTGTAATGTAT
GGCGCAAGATGGCGGAGAATGTATCGTTGTATTGCAAAAAAGGTGCTTTAATCGGTATTAGCGGCCGCATTCGAACAAGT
TCTTTTGAAAATGAGCAAGGGAAACGCATGTACCGAACGGAGATTACCGCAGAAAACGTATCATTTCTAGAGCGAAAAAA
GATACAAACGTCTCGTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.206

95.536

0.518
  ssbB Bacillus subtilis subsp. subtilis str. 168

52.336

95.536

0.5
  ssb Latilactobacillus sakei subsp. sakei 23K

47.321

100

0.473
  ssbB Lactococcus lactis subsp. cremoris KW2

40.952

93.75

0.384
  ssbB/cilA Streptococcus pneumoniae TIGR4

39.623

94.643

0.375
  ssbB/cilA Streptococcus mitis NCTC 12261

39.623

94.643

0.375
  ssbB/cilA Streptococcus pneumoniae Rx1

38.679

94.643

0.366
  ssbB/cilA Streptococcus pneumoniae D39

38.679

94.643

0.366
  ssbB/cilA Streptococcus pneumoniae R6

38.679

94.643

0.366
  ssbB/cilA Streptococcus mitis SK321

38.679

94.643

0.366