Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG285_RS24165 Genome accession   NZ_CP109450
Coordinates   5396329..5397012 (+) Length   227 a.a.
NCBI ID   WP_164261167.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01471     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 5391329..5402012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG285_RS24135 (OG285_24110) - 5391535..5392716 (-) 1182 WP_356825830.1 acyltransferase family protein -
  OG285_RS24140 (OG285_24115) - 5393226..5393420 (+) 195 WP_356825828.1 hypothetical protein -
  OG285_RS24155 (OG285_24130) tig 5393979..5395382 (+) 1404 WP_371792179.1 trigger factor -
  OG285_RS24160 (OG285_24135) clpP 5395660..5396277 (+) 618 WP_356825824.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG285_RS24165 (OG285_24140) clpP 5396329..5397012 (+) 684 WP_164261167.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG285_RS24170 (OG285_24145) clpX 5397169..5398461 (+) 1293 WP_356825822.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG285_RS24175 (OG285_24150) - 5398542..5399543 (-) 1002 WP_371792180.1 hypothetical protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 24885.28 Da        Isoelectric Point: 4.5097

>NTDB_id=676689 OG285_RS24165 WP_164261167.1 5396329..5397012(+) (clpP) [Streptomyces sp. NBC_01471]
MVNTSMNDYSASASGLYTGPQVDNRYIVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDP
DRDISIYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLIHQPSSQTGREQLSD
LEIAANEILRMRTQLEDLLAKHSTTPVEKIRDDIERDKILTAEDALAYGLVDQIVSTRKGSVGMMTT

Nucleotide


Download         Length: 684 bp        

>NTDB_id=676689 OG285_RS24165 WP_164261167.1 5396329..5397012(+) (clpP) [Streptomyces sp. NBC_01471]
ATGGTGAACACCAGCATGAACGACTACTCCGCCTCCGCCAGCGGCCTCTACACCGGCCCGCAGGTCGACAACCGCTACAT
CGTTCCGCGCTTCGTCGAGCGCACCTCGCAGGGCGTGCGCGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCGTGA
TCTTCCTCGGTGTGCAGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTGCTCTGCCTGGAGTCGATGGACCCG
GACCGGGACATCTCCATCTACATCAACAGCCCCGGTGGCTCGTTCACCGCGCTCACCGCGATCTACGACACGATGCAGTT
CGTGAAGCCGGACATCCAGACGGTCTGCATGGGCCAGGCGGCCTCCGCGGCCGCGGTCCTGCTGGCGGCCGGCACCCCCG
GCAAGCGCATGGCACTGCCGAACGCCCGTGTGCTGATCCACCAGCCGTCGTCGCAGACCGGCCGTGAGCAGCTCTCCGAC
CTGGAGATCGCGGCCAACGAAATCCTGCGTATGCGGACCCAGTTGGAAGACCTGCTGGCCAAGCACTCCACGACGCCGGT
CGAGAAGATCCGCGACGACATCGAGCGCGACAAGATCCTCACGGCCGAGGACGCGCTGGCCTACGGGCTGGTCGACCAGA
TCGTTTCGACCCGCAAGGGCTCCGTGGGAATGATGACCACCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(37-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

50.526

83.7

0.423
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

49.206

83.26

0.41
  clpP Streptococcus thermophilus LMD-9

44.33

85.463

0.379
  clpP Streptococcus pyogenes JRS4

44.33

85.463

0.379
  clpP Streptococcus pyogenes MGAS315

44.33

85.463

0.379
  clpP Streptococcus thermophilus LMG 18311

44.33

85.463

0.379
  clpP Lactococcus lactis subsp. cremoris KW2

44.503

84.141

0.374
  clpP Streptococcus mutans UA159

43.814

85.463

0.374
  clpP Streptococcus pneumoniae R6

44.041

85.022

0.374
  clpP Streptococcus pneumoniae TIGR4

44.041

85.022

0.374
  clpP Streptococcus pneumoniae D39

44.041

85.022

0.374
  clpP Streptococcus pneumoniae Rx1

44.041

85.022

0.374
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.979

84.141

0.37