Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG285_RS24160 Genome accession   NZ_CP109450
Coordinates   5395660..5396277 (+) Length   205 a.a.
NCBI ID   WP_356825824.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01471     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 5390660..5401277
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG285_RS24135 (OG285_24110) - 5391535..5392716 (-) 1182 WP_356825830.1 acyltransferase family protein -
  OG285_RS24140 (OG285_24115) - 5393226..5393420 (+) 195 WP_356825828.1 hypothetical protein -
  OG285_RS24155 (OG285_24130) tig 5393979..5395382 (+) 1404 WP_371792179.1 trigger factor -
  OG285_RS24160 (OG285_24135) clpP 5395660..5396277 (+) 618 WP_356825824.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG285_RS24165 (OG285_24140) clpP 5396329..5397012 (+) 684 WP_164261167.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG285_RS24170 (OG285_24145) clpX 5397169..5398461 (+) 1293 WP_356825822.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG285_RS24175 (OG285_24150) - 5398542..5399543 (-) 1002 WP_371792180.1 hypothetical protein -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 21620.53 Da        Isoelectric Point: 4.5494

>NTDB_id=676688 OG285_RS24160 WP_356825824.1 5395660..5396277(+) (clpP) [Streptomyces sp. NBC_01471]
MTNLMPYAAGEPNIGGGLGDQVYNRLLGERIIFLGQQVDDEIANKITAQLLLLAADPEKDIFLYINSPGGSVTAGMAVYD
TMQYIPNDVVTIGMGLAASMGQFLLTGGTAGKRFALPNTDILMHQGSAGLGGTASDIKIQAQQLLRTKKRMAEITARHSG
QTVDAIIRDGDRDRWYTAEEAKEYGLIDEIISSASGVPGGGGTGA

Nucleotide


Download         Length: 618 bp        

>NTDB_id=676688 OG285_RS24160 WP_356825824.1 5395660..5396277(+) (clpP) [Streptomyces sp. NBC_01471]
GTGACGAATCTGATGCCCTACGCCGCCGGCGAGCCCAACATCGGTGGCGGCCTCGGCGACCAGGTCTACAACCGACTGCT
CGGTGAGCGGATCATCTTCCTCGGCCAGCAGGTCGACGACGAGATCGCCAACAAGATCACCGCGCAGCTGCTCCTCCTTG
CCGCCGACCCGGAAAAGGACATCTTCCTTTACATCAACAGCCCCGGCGGCTCGGTGACGGCAGGCATGGCGGTCTACGAC
ACCATGCAGTACATCCCGAACGACGTGGTCACCATCGGTATGGGCCTCGCGGCCTCGATGGGCCAGTTCCTGCTGACCGG
CGGCACCGCGGGCAAGCGCTTCGCGCTCCCCAACACCGACATCCTGATGCACCAGGGCTCGGCCGGTCTCGGCGGCACCG
CATCGGACATCAAGATCCAGGCCCAGCAGCTGCTCCGTACGAAGAAGCGCATGGCGGAGATCACCGCCCGGCACTCCGGC
CAGACCGTCGACGCGATCATCCGCGACGGTGACCGCGACCGCTGGTACACGGCGGAGGAGGCCAAGGAGTACGGCCTCAT
CGACGAGATCATCTCCTCCGCCTCGGGCGTTCCGGGCGGCGGCGGCACCGGGGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(20-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

52.356

93.171

0.488
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50.521

93.659

0.473
  clpP Lactococcus lactis subsp. cremoris KW2

51.977

86.341

0.449
  clpP Streptococcus mutans UA159

52

85.366

0.444
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

51.412

86.341

0.444
  clpP Streptococcus pyogenes MGAS315

49.714

85.366

0.424
  clpP Streptococcus pyogenes JRS4

49.714

85.366

0.424
  clpP Streptococcus pneumoniae Rx1

48.588

86.341

0.42
  clpP Streptococcus pneumoniae D39

48.588

86.341

0.42
  clpP Streptococcus pneumoniae R6

48.588

86.341

0.42
  clpP Streptococcus pneumoniae TIGR4

48.588

86.341

0.42
  clpP Streptococcus thermophilus LMG 18311

49.143

85.366

0.42
  clpP Streptococcus thermophilus LMD-9

49.143

85.366

0.42