Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   MRK30_RS18135 Genome accession   NZ_CP095357
Coordinates   3697412..3698638 (+) Length   408 a.a.
NCBI ID   WP_126117775.1    Uniprot ID   A0AAE9M910
Organism   Acinetobacter pittii strain 19MO01SH04     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3692412..3703638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MRK30_RS18115 (MRK30_18145) secG 3693056..3693385 (-) 330 WP_002115012.1 preprotein translocase subunit SecG -
  MRK30_RS18120 (MRK30_18150) tpiA 3693398..3694192 (-) 795 WP_032063691.1 triose-phosphate isomerase -
  MRK30_RS18125 (MRK30_18155) - 3694529..3695619 (+) 1091 WP_085947913.1 IS4-like element ISAba1 family transposase -
  MRK30_RS18130 (MRK30_18160) pilB 3695673..3697385 (+) 1713 WP_032070753.1 type IV-A pilus assembly ATPase PilB Machinery gene
  MRK30_RS18135 (MRK30_18165) pilC 3697412..3698638 (+) 1227 WP_126117775.1 type II secretion system F family protein Machinery gene
  MRK30_RS18140 (MRK30_18170) pilD 3698638..3699498 (+) 861 WP_032070754.1 A24 family peptidase Machinery gene
  MRK30_RS18145 (MRK30_18175) coaE 3699500..3700096 (+) 597 WP_032070755.1 dephospho-CoA kinase -
  MRK30_RS18150 (MRK30_18180) - 3700093..3701007 (-) 915 WP_032070756.1 DMT family transporter -
  MRK30_RS18155 (MRK30_18185) rlmB 3701043..3701792 (-) 750 WP_005079348.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  MRK30_RS18160 (MRK30_18190) - 3701895..3702221 (-) 327 WP_002115102.1 pyrimidine/purine nucleoside phosphorylase -
  MRK30_RS18165 (MRK30_18195) - 3702298..3703608 (-) 1311 WP_032063688.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45057.48 Da        Isoelectric Point: 9.8207

>NTDB_id=676498 MRK30_RS18135 WP_126117775.1 3697412..3698638(+) (pilC) [Acinetobacter pittii strain 19MO01SH04]
MTVKKAQMMPTFAYEGVDRKGVKIKGELPAKNMALAKVTLRKQGVTVRNIREKRKNILEGLFKKKVSTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGSTFASALRKYPQHFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAVVVTIILMVKVVPVFQDLFSSFGADLPAFTQMVVNMSKWMQEYWFIMIIVIGAVIA
AFLEAKKRSKKFRDGLDKLTLKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVIYEEAVMKIREDVA
TGQQLQFAMRVSNRFPSMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAILGVLVGSLVIAMYLP
IFQMGSVI

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=676498 MRK30_RS18135 WP_126117775.1 3697412..3698638(+) (pilC) [Acinetobacter pittii strain 19MO01SH04]
ATGACTGTCAAAAAGGCACAAATGATGCCGACTTTTGCTTATGAAGGGGTTGACCGTAAGGGCGTAAAAATTAAGGGCGA
ACTTCCAGCTAAGAATATGGCCTTAGCCAAAGTCACCCTACGCAAACAAGGTGTAACTGTCCGTAATATTCGGGAAAAGC
GTAAAAATATTCTTGAGGGTTTATTCAAGAAGAAAGTATCAACACTCGATATCACAATTTTTACTAGGCAACTTGCAACA
ATGATGAAAGCAGGTGTGCCACTGGTACAAGGCTTTGAAATTGTAGCGGAGGGTCTGGAAAACCCAGCCATGCGCGAGGT
GGTACTCGGGATTAAAGGTGAAGTTGAAGGTGGTAGTACCTTTGCTTCAGCTTTAAGGAAGTATCCTCAACACTTCGATA
ACTTGTTTTGTTCTCTTGTAGAGTCTGGCGAACAATCTGGTGCGCTTGAAACCATGTTGGACCGTGTGGCAATTTACAAA
GAAAAAAGTGAATTGCTTAAGCAGAAAATTAAGAAGGCTATGAAATATCCAGCAACGGTTATTGTAGTTGCTGTGGTTGT
TACCATTATTTTGATGGTTAAAGTAGTGCCTGTTTTCCAAGACCTGTTTTCTTCTTTTGGTGCAGATTTACCTGCATTTA
CCCAAATGGTCGTGAATATGTCGAAATGGATGCAGGAATACTGGTTCATTATGATTATTGTGATTGGAGCAGTGATTGCT
GCCTTTCTGGAAGCCAAGAAGCGCAGTAAAAAATTCCGTGATGGATTAGATAAACTTACACTGAAACTACCTATCTTTGG
CGATCTGGTTTATAAGGCGATTATTGCCCGTTATAGCCGTACTTTAGCCACCACGTTTGCCGCTGGTGTTCCGCTCATTG
ATGCGCTTGAGTCAACGGCTGGTGCAACCAACAATGTCATTTATGAAGAAGCCGTCATGAAAATTCGTGAAGATGTTGCT
ACTGGTCAACAACTCCAATTTGCAATGCGTGTTTCAAATCGTTTTCCATCTATGGCTATACAAATGGTCGCAATTGGTGA
AGAATCTGGTGCGCTAGACAGCATGCTCGATAAAGTTGCTACTTATTATGAAAATGAAGTTGATAATGCCGTTGATGGTT
TAACTTCAATGATGGAACCTTTAATCATGGCAATTTTAGGGGTGCTCGTAGGTAGTCTAGTGATTGCTATGTATCTTCCA
ATTTTCCAAATGGGCTCAGTCATATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

97.549

100

0.975
  pilC Acinetobacter baylyi ADP1

85.294

100

0.853
  pilC Pseudomonas stutzeri DSM 10701

59.259

99.265

0.588
  pilC Legionella pneumophila strain ERS1305867

52.593

99.265

0.522
  pilG Neisseria gonorrhoeae MS11

46.231

97.549

0.451
  pilG Neisseria meningitidis 44/76-A

46.231

97.549

0.451
  pilC Vibrio cholerae strain A1552

42.157

100

0.422
  pilC Vibrio campbellii strain DS40M4

40.098

100

0.402
  pilC Thermus thermophilus HB27

37.157

98.284

0.365