NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	OG223_RS18945	Genome accession	NZ_CP109444
Coordinates	4230671..4231273 (-)	Length	200 a.a.
NCBI ID	WP_329265356.1	Uniprot ID	-
Organism	Streptomyces sp. NBC_01478
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 4225671..4236273

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OG223_RS18930 (OG223_18930)	-	4227412..4228428 (+)	1017	WP_329249759.1	hypothetical protein	-
OG223_RS18935 (OG223_18935)	clpX	4228493..4229779 (-)	1287	WP_033285988.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
OG223_RS18940 (OG223_18940)	clpP	4229940..4230620 (-)	681	WP_329249762.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OG223_RS18945 (OG223_18945)	clpP	4230671..4231273 (-)	603	WP_329265356.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OG223_RS18950 (OG223_18950)	tig	4231520..4232914 (-)	1395	WP_329249765.1	trigger factor	-
OG223_RS18965 (OG223_18965)	-	4233545..4233739 (-)	195	WP_026151384.1	hypothetical protein	-
OG223_RS18970 (OG223_18970)	-	4234043..4235173 (+)	1131	WP_329249769.1	acyltransferase family protein	-
OG223_RS18975 (OG223_18975)	-	4235170..4235625 (-)	456	WP_329249772.1	HD domain-containing protein	-

Sequence

Protein

Download Length: 200 a.a. Molecular weight: 21250.23 Da Isoelectric Point: 4.6831

                                >NTDB_id=676333 OG223_RS18945 WP_329265356.1 4230671..4231273(-) (clpP) [Streptomyces sp. NBC_01478]

MPTAAGEPSIGGLGDQVYNRLLGERIIFLGQAVDDDIANKITAQLLLLASDPEKDIFLYINSPGGSITAGMAIYDTMQYI

KNDVVTIAMGMAASMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAERLLHTKKRMAELTSFHTGQTVEQ

VTRDSDRDRWFDPIEAKEYGLIDDIMPTAAGMPGGGGTGA

Nucleotide

Download Length: 603 bp

                                >NTDB_id=676333 OG223_RS18945 WP_329265356.1 4230671..4231273(-) (clpP) [Streptomyces sp. NBC_01478]

ATGCCTACAGCCGCCGGCGAGCCCTCTATCGGTGGCCTCGGCGACCAGGTCTACAACCGGCTGCTCGGTGAGCGGATCAT

CTTCCTCGGCCAGGCGGTCGACGACGACATCGCGAACAAGATCACCGCGCAGCTCCTCCTCCTTGCCTCCGACCCGGAGA

AGGACATCTTTCTGTACATCAACAGCCCCGGTGGTTCGATCACCGCGGGCATGGCGATCTACGACACCATGCAGTACATC

AAGAACGACGTGGTGACCATCGCCATGGGCATGGCGGCCTCGATGGGCCAGTTCCTGCTCAGCGCGGGCACCCCCGGCAA

GCGCTTCGCGCTGCCGAACGCCGAGATCCTGATCCACCAGCCCTCCGCCGGCCTCGCCGGTTCCGCGTCGGACATCAAGA

TCCACGCCGAGCGGCTGCTGCACACCAAGAAGCGGATGGCGGAGCTGACCTCCTTCCACACCGGTCAGACGGTCGAGCAG

GTCACCCGTGACTCCGACCGCGACCGCTGGTTCGACCCGATCGAGGCCAAGGAGTACGGCCTCATCGACGACATCATGCC

CACGGCCGCCGGTATGCCGGGCGGCGGCGGCACCGGGGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(15-187)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	55.615	93.5	0.52
clpP	Lactococcus lactis subsp. cremoris KW2	51.852	94.5	0.49
clpP	Streptococcus mutans UA159	51.323	94.5	0.485
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	51.323	94.5	0.485
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	50.526	95	0.48
clpP	Streptococcus thermophilus LMD-9	49.206	94.5	0.465
clpP	Streptococcus thermophilus LMG 18311	49.206	94.5	0.465
clpP	Streptococcus pyogenes JRS4	48.677	94.5	0.46
clpP	Streptococcus pyogenes MGAS315	48.677	94.5	0.46
clpP	Streptococcus pneumoniae Rx1	48.677	94.5	0.46
clpP	Streptococcus pneumoniae D39	48.677	94.5	0.46
clpP	Streptococcus pneumoniae R6	48.677	94.5	0.46
clpP	Streptococcus pneumoniae TIGR4	48.677	94.5	0.46

Detailed information NTG0676333