Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG223_RS18940 Genome accession   NZ_CP109444
Coordinates   4229940..4230620 (-) Length   226 a.a.
NCBI ID   WP_329249762.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01478     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 4224940..4235620
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG223_RS18930 (OG223_18930) - 4227412..4228428 (+) 1017 WP_329249759.1 hypothetical protein -
  OG223_RS18935 (OG223_18935) clpX 4228493..4229779 (-) 1287 WP_033285988.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG223_RS18940 (OG223_18940) clpP 4229940..4230620 (-) 681 WP_329249762.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG223_RS18945 (OG223_18945) clpP 4230671..4231273 (-) 603 WP_329265356.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG223_RS18950 (OG223_18950) tig 4231520..4232914 (-) 1395 WP_329249765.1 trigger factor -
  OG223_RS18965 (OG223_18965) - 4233545..4233739 (-) 195 WP_026151384.1 hypothetical protein -
  OG223_RS18970 (OG223_18970) - 4234043..4235173 (+) 1131 WP_329249769.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25031.42 Da        Isoelectric Point: 4.5781

>NTDB_id=676332 OG223_RS18940 WP_329249762.1 4229940..4230620(-) (clpP) [Streptomyces sp. NBC_01478]
MNDFPGNGLYEHARAEYTAPAAESRYVIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDP
DRDISIYINSPGGSFTALTAIYDTMQFVKPDVQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLIHQPYSETGRGQVSD
LEIAANEILRMRAQLEDMLAKHSTTPLEKIREDIERDKILTAEDALAYGLIDQIISTRKMNNADVR

Nucleotide


Download         Length: 681 bp        

>NTDB_id=676332 OG223_RS18940 WP_329249762.1 4229940..4230620(-) (clpP) [Streptomyces sp. NBC_01478]
GTGAACGACTTCCCCGGCAACGGCCTGTACGAGCACGCACGCGCCGAATACACGGCTCCCGCCGCCGAATCCCGCTATGT
GATCCCGCGGTTCGTGGAGCGCACCTCGCAGGGCGTGCGTGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCGTGA
TCTTCCTCGGTGTCCAGATCGACGACGCGTCGGCCAACGACGTCATGGCGCAGTTGCTGTGCCTGGAGTCGATGGACCCG
GACCGCGACATCTCGATCTACATCAACAGCCCCGGTGGCTCCTTCACCGCGCTGACCGCGATCTACGACACGATGCAGTT
CGTGAAGCCGGACGTCCAGACGGTCTGCATGGGCCAGGCCGCGTCCGCCGCCGCCGTCCTGCTGGCCGCCGGTACGCCGG
GCAAGCGCATGGCGCTGCCGAACGCGCGCGTGCTGATCCACCAGCCCTACAGCGAGACGGGCCGGGGTCAGGTCTCCGAC
CTGGAGATCGCGGCCAACGAGATCCTCCGCATGCGTGCCCAGCTCGAGGACATGCTGGCCAAGCACTCGACCACCCCGCT
GGAGAAGATCCGCGAGGACATCGAGCGCGACAAGATCCTCACGGCCGAGGACGCCCTGGCGTACGGCCTGATCGACCAGA
TCATCTCCACCCGGAAGATGAACAACGCCGACGTCCGCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(37-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

53.158

84.071

0.447
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50.532

83.186

0.42
  clpP Streptococcus mutans UA159

44.724

88.053

0.394
  clpP Streptococcus thermophilus LMD-9

45.641

86.283

0.394
  clpP Streptococcus thermophilus LMG 18311

45.641

86.283

0.394
  clpP Streptococcus pyogenes JRS4

45.641

86.283

0.394
  clpP Streptococcus pyogenes MGAS315

45.641

86.283

0.394
  clpP Streptococcus pneumoniae TIGR4

45.408

86.726

0.394
  clpP Streptococcus pneumoniae Rx1

45.408

86.726

0.394
  clpP Streptococcus pneumoniae D39

45.408

86.726

0.394
  clpP Streptococcus pneumoniae R6

45.408

86.726

0.394
  clpP Lactococcus lactis subsp. cremoris KW2

44.898

86.726

0.389
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.878

86.726

0.381