Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   MRN59_RS04410 Genome accession   NZ_CP095314
Coordinates   792622..792945 (+) Length   107 a.a.
NCBI ID   WP_041636417.1    Uniprot ID   -
Organism   Macrococcoides caseolyticum strain 19MO06SA05     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 787622..797945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MRN59_RS04370 (MRN59_04360) - 787677..787868 (+) 192 WP_133445012.1 YqgQ family protein -
  MRN59_RS04375 (MRN59_04365) - 787865..788833 (+) 969 WP_354680534.1 ROK family glucokinase -
  MRN59_RS04380 (MRN59_04370) - 788833..789144 (+) 312 WP_133445014.1 MTH1187 family thiamine-binding protein -
  MRN59_RS04385 (MRN59_04375) - 789169..789408 (-) 240 WP_041636024.1 DUF2759 domain-containing protein -
  MRN59_RS04390 (MRN59_04380) - 789498..790118 (+) 621 WP_133445015.1 MBL fold metallo-hydrolase -
  MRN59_RS04395 (MRN59_04385) - 790145..790393 (-) 249 WP_041636023.1 DUF2626 domain-containing protein -
  MRN59_RS04400 (MRN59_04390) comGA 790605..791576 (+) 972 WP_133445016.1 competence type IV pilus ATPase ComGA Machinery gene
  MRN59_RS04405 (MRN59_04395) comGB 791527..792600 (+) 1074 WP_133445017.1 competence type IV pilus assembly protein ComGB -
  MRN59_RS04410 (MRN59_04400) comGC 792622..792945 (+) 324 WP_041636417.1 competence type IV pilus major pilin ComGC Machinery gene
  MRN59_RS04415 (MRN59_04405) - 792938..793363 (+) 426 WP_012657089.1 type II secretion system protein -
  MRN59_RS04420 (MRN59_04410) - 793350..793592 (+) 243 WP_133445018.1 hypothetical protein -
  MRN59_RS04425 (MRN59_04415) comGF 793537..793989 (+) 453 WP_133445019.1 competence type IV pilus minor pilin ComGF -
  MRN59_RS04430 (MRN59_04420) - 794150..794656 (+) 507 WP_101140318.1 shikimate kinase -
  MRN59_RS04435 (MRN59_04425) gcvT 794794..795879 (+) 1086 WP_101140329.1 glycine cleavage system aminomethyltransferase GcvT -
  MRN59_RS04440 (MRN59_04430) gcvPA 795892..797235 (+) 1344 WP_012657085.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 11848.98 Da        Isoelectric Point: 8.4918

>NTDB_id=676332 MRN59_RS04410 WP_041636417.1 792622..792945(+) (comGC) [Macrococcoides caseolyticum strain 19MO06SA05]
MARRFKKQFSKDDGFTLIEMLLVLLVISILIIVIIPNIAKQSKTVQAKGCEAQVKMVQGQIEAYRIDTGKTPSTVNELVP
EYLKENQVKCKDGTDIIINNGEALLGA

Nucleotide


Download         Length: 324 bp        

>NTDB_id=676332 MRN59_RS04410 WP_041636417.1 792622..792945(+) (comGC) [Macrococcoides caseolyticum strain 19MO06SA05]
ATGGCGCGCAGGTTTAAAAAACAGTTTAGTAAGGATGATGGATTTACTTTAATTGAAATGTTATTAGTATTGCTCGTAAT
TTCGATTTTAATTATCGTCATTATTCCAAACATCGCTAAACAATCTAAGACTGTACAAGCTAAAGGATGCGAAGCTCAGG
TAAAGATGGTACAAGGTCAGATCGAAGCCTATCGGATCGATACTGGTAAAACACCGTCTACAGTAAATGAGCTTGTTCCT
GAATATTTGAAAGAAAATCAAGTGAAATGTAAAGATGGAACAGACATAATAATCAATAATGGCGAGGCATTATTAGGTGC
TTAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus MW2

55.789

88.785

0.495
  comGC Staphylococcus aureus N315

55.789

88.785

0.495
  comGC Bacillus subtilis subsp. subtilis str. 168

45.652

85.981

0.393