Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OHB33_RS27305 Genome accession   NZ_CP109365
Coordinates   6244211..6244891 (+) Length   226 a.a.
NCBI ID   WP_081217263.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01558     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 6239211..6249891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHB33_RS27280 (OHB33_27265) - 6240756..6240950 (+) 195 WP_016435177.1 hypothetical protein -
  OHB33_RS27295 (OHB33_27280) tig 6241680..6243065 (+) 1386 WP_164369328.1 trigger factor -
  OHB33_RS27300 (OHB33_27285) clpP 6243488..6244093 (+) 606 WP_060897745.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OHB33_RS27305 (OHB33_27290) clpP 6244211..6244891 (+) 681 WP_081217263.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OHB33_RS27310 (OHB33_27295) clpX 6245052..6246338 (+) 1287 WP_081221566.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OHB33_RS27315 (OHB33_27300) - 6246537..6246821 (+) 285 WP_266613689.1 hypothetical protein -
  OHB33_RS27320 (OHB33_27305) - 6246922..6247914 (-) 993 WP_266848534.1 hypothetical protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 24954.37 Da        Isoelectric Point: 4.5652

>NTDB_id=674917 OHB33_RS27305 WP_081217263.1 6244211..6244891(+) (clpP) [Streptomyces sp. NBC_01558]
MNDFPGSGLFARTEAEYTGPRAESRYVIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDP
DRDISVYINSPGGSFTALTAIYDTMQFVKPDVQTVCMGQAASAAAILLAAGTPGKRMALPNARVLIHQPYSETGRGQVSD
LEIAANEILRMRSQLEDMLAKHSTTPIEKIREDIERDKILTAEDALAYGLIDQIISTRKMNNSAVV

Nucleotide


Download         Length: 681 bp        

>NTDB_id=674917 OHB33_RS27305 WP_081217263.1 6244211..6244891(+) (clpP) [Streptomyces sp. NBC_01558]
GTGAACGACTTCCCCGGCAGCGGCCTCTTCGCCCGCACTGAGGCCGAGTACACCGGTCCTCGTGCGGAGTCCCGCTACGT
CATCCCGCGCTTCGTCGAGCGCACCTCGCAGGGCGTGCGTGAGTACGACCCGTACGCGAAGCTGTTCGAGGAGCGCGTGA
TCTTCCTCGGCGTGCAGATCGACGACGCCTCAGCCAACGACGTCATGGCGCAGCTCCTGTGCCTGGAGTCGATGGACCCC
GACCGTGACATCTCGGTCTACATCAACAGCCCCGGTGGCTCGTTCACGGCCCTCACGGCCATCTACGACACGATGCAGTT
CGTGAAGCCGGACGTCCAGACGGTCTGCATGGGCCAGGCCGCCTCGGCCGCCGCGATCCTGCTGGCCGCCGGCACCCCGG
GCAAGCGCATGGCGCTCCCGAACGCCCGTGTGCTGATCCACCAGCCGTACAGCGAGACCGGCCGCGGCCAGGTCTCGGAC
CTCGAGATCGCCGCCAACGAGATCCTCCGGATGCGCTCGCAGCTGGAAGACATGCTGGCCAAGCACTCGACCACGCCGAT
CGAGAAGATCCGCGAGGACATCGAGCGCGACAAGATCCTCACGGCTGAGGACGCGCTCGCGTACGGCCTGATCGACCAGA
TCATCTCCACCCGGAAGATGAACAACTCGGCGGTTGTCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(37-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

52.632

84.071

0.442
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50.532

83.186

0.42
  clpP Streptococcus mutans UA159

45.729

88.053

0.403
  clpP Lactococcus lactis subsp. cremoris KW2

45.729

88.053

0.403
  clpP Streptococcus thermophilus LMD-9

46.667

86.283

0.403
  clpP Streptococcus thermophilus LMG 18311

46.667

86.283

0.403
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

44.724

88.053

0.394
  clpP Streptococcus pyogenes JRS4

45.641

86.283

0.394
  clpP Streptococcus pyogenes MGAS315

45.641

86.283

0.394
  clpP Streptococcus pneumoniae D39

44.898

86.726

0.389
  clpP Streptococcus pneumoniae Rx1

44.898

86.726

0.389
  clpP Streptococcus pneumoniae R6

44.898

86.726

0.389
  clpP Streptococcus pneumoniae TIGR4

44.898

86.726

0.389