Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MUN88_RS05770 Genome accession   NZ_CP095072
Coordinates   1172643..1173170 (+) Length   175 a.a.
NCBI ID   WP_244721995.1    Uniprot ID   -
Organism   Gracilibacillus caseinilyticus strain SSWR10-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1167643..1178170
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUN88_RS05745 (MUN88_05745) - 1168844..1169548 (+) 705 WP_244721968.1 DUF554 domain-containing protein -
  MUN88_RS05750 (MUN88_05750) - 1169629..1170639 (+) 1011 WP_244721971.1 hypothetical protein -
  MUN88_RS05755 (MUN88_05755) - 1170678..1170872 (+) 195 WP_244721974.1 DUF951 domain-containing protein -
  MUN88_RS05760 (MUN88_05760) ychF 1171088..1172188 (+) 1101 WP_244721990.1 redox-regulated ATPase YchF -
  MUN88_RS05765 (MUN88_05765) rpsF 1172337..1172627 (+) 291 WP_244721993.1 30S ribosomal protein S6 -
  MUN88_RS05770 (MUN88_05770) ssbA 1172643..1173170 (+) 528 WP_244721995.1 single-stranded DNA-binding protein Machinery gene
  MUN88_RS05775 (MUN88_05775) rpsR 1173191..1173421 (+) 231 WP_244721997.1 30S ribosomal protein S18 -
  MUN88_RS05780 (MUN88_05780) serA 1174673..1176259 (+) 1587 WP_244721999.1 phosphoglycerate dehydrogenase -
  MUN88_RS05785 (MUN88_05785) - 1176942..1177718 (-) 777 WP_244722002.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19309.79 Da        Isoelectric Point: 4.5407

>NTDB_id=674916 MUN88_RS05770 WP_244721995.1 1172643..1173170(+) (ssbA) [Gracilibacillus caseinilyticus strain SSWR10-1]
MLNRVVLVGRLTKDPDLRYTPNGVAVANFTVACNRPFSNQQGQREADFINCVTWRRQAENLANYMGKGSLVGVDGRIQTR
SFDNQEGQRVFMTEVVADSIQFLETKGGSGGGQPNNQGSQGYNPNQNQPSQGNQNQNQFNHNNNNNNNNQGNSGNENPFQ
DSGEPIDISDDDLPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=674916 MUN88_RS05770 WP_244721995.1 1172643..1173170(+) (ssbA) [Gracilibacillus caseinilyticus strain SSWR10-1]
ATGTTAAATCGTGTCGTACTTGTCGGCAGGTTAACCAAAGATCCTGACTTACGTTATACGCCAAATGGTGTAGCCGTAGC
TAATTTTACCGTAGCTTGTAACCGTCCTTTCTCTAATCAGCAAGGACAACGAGAAGCAGACTTTATCAACTGTGTCACAT
GGAGAAGGCAAGCAGAAAATCTTGCAAATTACATGGGCAAAGGAAGTCTAGTCGGTGTAGACGGTCGTATTCAAACTCGT
AGTTTTGATAATCAAGAAGGTCAGCGAGTCTTCATGACGGAAGTAGTTGCAGATTCGATCCAATTTTTAGAAACAAAAGG
CGGATCAGGTGGTGGACAACCCAACAACCAAGGATCTCAAGGCTATAATCCAAATCAGAACCAACCGAGTCAAGGAAATC
AAAATCAAAATCAATTTAATCATAATAATAACAACAATAATAATAATCAAGGAAATAGCGGTAATGAGAATCCATTCCAA
GATAGTGGAGAGCCTATCGATATTTCTGATGATGATTTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

66.477

100

0.669
  ssb Latilactobacillus sakei subsp. sakei 23K

53.714

100

0.537
  ssb Glaesserella parasuis strain SC1401

39.56

100

0.411
  ssbB Bacillus subtilis subsp. subtilis str. 168

61.321

60.571

0.371