Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OHA20_RS25920 Genome accession   NZ_CP109344
Coordinates   5659956..5661368 (-) Length   470 a.a.
NCBI ID   WP_389123557.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01579     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5654956..5666368
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA20_RS25900 (OHA20_25950) - 5655204..5655854 (-) 651 WP_330245149.1 SigE family RNA polymerase sigma factor -
  OHA20_RS25905 (OHA20_25955) - 5656030..5656932 (-) 903 WP_326629355.1 A/G-specific adenine glycosylase -
  OHA20_RS25910 (OHA20_25960) - 5657787..5658596 (+) 810 WP_406363323.1 hypothetical protein -
  OHA20_RS25915 (OHA20_25965) disA 5658751..5659875 (-) 1125 WP_030972387.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OHA20_RS25920 (OHA20_25970) radA/sms 5659956..5661368 (-) 1413 WP_389123557.1 DNA repair protein RadA Machinery gene
  OHA20_RS25925 (OHA20_25975) - 5661619..5663403 (+) 1785 WP_355226967.1 BACON domain-containing protein -
  OHA20_RS25930 (OHA20_25980) - 5663435..5664304 (-) 870 WP_267004539.1 hypothetical protein -
  OHA20_RS25935 (OHA20_25985) - 5664345..5665292 (+) 948 WP_330245145.1 Ppx/GppA phosphatase family protein -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 49618.69 Da        Isoelectric Point: 8.2605

>NTDB_id=674586 OHA20_RS25920 WP_389123557.1 5659956..5661368(-) (radA/sms) [Streptomyces sp. NBC_01579]
MAARTKSAKDRPSYRCTECGWTTAKWLGRCPECQAWGTVEEFGGAPAVRTTAAGRVSSAALPIGQVDSRQATARPTGVDE
LDRVLGGGLVPGAVVLVAGEPGVGKSTLLLDVGAKAASDEHRTLYVTAEESASQVRLRADRIRAINDHLYLAAETDLSAV
LGHLDAVKPSLLILDSVQTVASPEIEGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLS
FEGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGRRPLVAEVQALTVDSQ
IPSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVG
LAGEVRRVTGVQRRLAEAHRLGFTHALVPTDPGRVPSGMKVTEVANMGDALRVLPRRSRTEAPREADARR

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=674586 OHA20_RS25920 WP_389123557.1 5659956..5661368(-) (radA/sms) [Streptomyces sp. NBC_01579]
ATGGCTGCCCGTACAAAATCCGCGAAGGACCGGCCGTCCTACCGCTGCACCGAGTGCGGCTGGACGACCGCCAAGTGGCT
CGGCCGATGCCCCGAATGCCAGGCGTGGGGGACGGTCGAGGAGTTCGGCGGCGCCCCTGCCGTGCGGACGACGGCGGCCG
GCCGCGTCAGCTCGGCCGCACTCCCCATCGGCCAGGTCGACAGCCGGCAGGCCACCGCCCGGCCGACCGGGGTCGACGAG
CTGGACCGGGTGCTCGGCGGCGGGCTGGTCCCCGGCGCCGTGGTGCTGGTCGCGGGCGAGCCGGGCGTCGGCAAGTCGAC
GCTGCTGCTGGACGTGGGCGCCAAGGCCGCCAGCGACGAGCACCGCACGCTCTATGTCACCGCGGAGGAGTCCGCGAGCC
AGGTGCGGCTGCGCGCCGACCGGATCCGGGCGATCAACGACCACCTCTACCTCGCCGCCGAGACCGACCTCTCCGCGGTC
CTCGGCCATCTGGACGCGGTCAAGCCGTCCCTGCTCATCCTCGACTCCGTGCAGACCGTCGCCTCGCCAGAGATCGAGGG
CGCACCCGGCGGGATGGCGCAGGTCCGGGAGGTAGCCGGTGCGCTCATCCGCGCCTCCAAGGAGCGCGGCATGTCCACGC
TGCTGGTCGGCCATGTCACCAAGGACGGCGCGATCGCCGGGCCACGGCTGCTGGAGCACCTCGTCGATGTGGTGCTGTCC
TTCGAGGGCGACCGGCATGCACGCCTCCGGCTGGTCCGGGGCGTGAAGAACCGGTACGGGGCGACCGACGAGGTCGGCTG
TTTCGAACTGCACGACGAGGGCATCACGGGCCTCGCCGACCCGTCCGGTCTCTTCCTCACCCGGCGCGACGAGCCCGTGC
CGGGCACCTGTCTGACGGTCACGCTGGAGGGGCGGCGCCCGCTCGTCGCCGAAGTGCAGGCGCTGACGGTCGATTCGCAG
ATCCCCTCCCCGCGGCGCACCACCTCCGGTCTGGAGACGTCCCGGGTCTCGATGATGCTGGCGGTTCTGGAGCAGCGCGG
CCGGATCAGCGCACTCGGCAAGCGGGACATCTACAGCGCCACGGTCGGCGGCGTGAAGCTTTCCGAACCCGCCGCGGACC
TTGCGATCGCGCTTGCGCTGGCCAGCGCGGCAAGCGACACACCACTGCCCAAGAACCTGGTGGCGATCGGCGAGGTGGGC
CTCGCGGGCGAGGTCAGAAGGGTCACGGGGGTGCAGCGGAGACTGGCCGAAGCACACCGTCTGGGCTTCACCCACGCGCT
GGTCCCGACCGACCCGGGGAGGGTTCCATCCGGTATGAAGGTCACGGAAGTCGCCAACATGGGCGACGCGCTCAGAGTGC
TCCCGCGCCGGTCTCGTACAGAGGCCCCACGGGAGGCCGACGCACGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(82-223)

Subunit ChlI of Mg-chelatase (ChlI)

(370-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.267

96.383

0.417
  radA Streptococcus pneumoniae Rx1

42.384

96.383

0.409
  radA Streptococcus pneumoniae D39

42.384

96.383

0.409
  radA Streptococcus pneumoniae R6

42.384

96.383

0.409
  radA Streptococcus pneumoniae TIGR4

42.384

96.383

0.409
  radA Streptococcus mitis SK321

43.823

91.277

0.4
  radA Streptococcus mitis NCTC 12261

43.823

91.277

0.4