Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | LEN_RS05230 | Genome accession | NZ_AP014940 |
| Coordinates | 1224570..1225838 (-) | Length | 422 a.a. |
| NCBI ID | WP_096376939.1 | Uniprot ID | A0AAU9AJL2 |
| Organism | Lysobacter enzymogenes strain M497-1 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1219570..1230838
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LEN_RS05215 (LEN_1073) | - | 1221799..1222866 (+) | 1068 | WP_096376936.1 | Nudix family hydrolase | - |
| LEN_RS05220 (LEN_1074) | coaE | 1223049..1223663 (-) | 615 | WP_096376937.1 | dephospho-CoA kinase | - |
| LEN_RS05225 (LEN_1075) | - | 1223663..1224550 (-) | 888 | WP_096376938.1 | A24 family peptidase | - |
| LEN_RS05230 (LEN_1076) | pilC | 1224570..1225838 (-) | 1269 | WP_096376939.1 | type II secretion system F family protein | Machinery gene |
| LEN_RS05235 (LEN_1077) | pilB | 1225842..1227569 (-) | 1728 | WP_096376940.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| LEN_RS05240 (LEN_1078) | - | 1227704..1228567 (+) | 864 | WP_096376941.1 | glycosyltransferase family 2 protein | - |
| LEN_RS05245 (LEN_1079) | - | 1228564..1229268 (+) | 705 | WP_096376942.1 | class I SAM-dependent methyltransferase | - |
| LEN_RS05250 (LEN_1080) | - | 1229265..1230416 (+) | 1152 | WP_096376943.1 | glycosyltransferase | - |
Sequence
Protein
Download Length: 422 a.a. Molecular weight: 45982.39 Da Isoelectric Point: 10.2301
>NTDB_id=67448 LEN_RS05230 WP_096376939.1 1224570..1225838(-) (pilC) [Lysobacter enzymogenes strain M497-1]
MSATRSTTRAATKTAPAVRRENPLEMFVWQGTDKRGVKMKGEQSAKNANLLRAELRRQGITPDVVKPKGKPLFGASGKRI
TPGDIAIFSRQIATMMKSGVPIVTSLEIIGEGHKNPRMKKLLNAIRADLESGLSLYEAMSKHPVQFDELYRNLVKAGESA
GVLETVLDTVATYKENIETLKGKIKKALFYPATVVAVAILVSAILLIFVVPQFQATFKSFGADLPAFTLMVIGMSDFMIQ
WWWAVLLLVIGAGVAFIMAKNRSPAFAHFLDRAMLKIPVVGQILHNAAVARFARTLAVTFRAGVPLVEALDTVAGATGNV
VYEKAVYRIRDDVSVGYQVNMAMKQVNLFPHMVIQMTAIGEEAGALDTMLVKVAEFYEQEVNNAVDALSSLLEPLIMIIL
GVIVGGMVVAMYLPIFKLAATI
MSATRSTTRAATKTAPAVRRENPLEMFVWQGTDKRGVKMKGEQSAKNANLLRAELRRQGITPDVVKPKGKPLFGASGKRI
TPGDIAIFSRQIATMMKSGVPIVTSLEIIGEGHKNPRMKKLLNAIRADLESGLSLYEAMSKHPVQFDELYRNLVKAGESA
GVLETVLDTVATYKENIETLKGKIKKALFYPATVVAVAILVSAILLIFVVPQFQATFKSFGADLPAFTLMVIGMSDFMIQ
WWWAVLLLVIGAGVAFIMAKNRSPAFAHFLDRAMLKIPVVGQILHNAAVARFARTLAVTFRAGVPLVEALDTVAGATGNV
VYEKAVYRIRDDVSVGYQVNMAMKQVNLFPHMVIQMTAIGEEAGALDTMLVKVAEFYEQEVNNAVDALSSLLEPLIMIIL
GVIVGGMVVAMYLPIFKLAATI
Nucleotide
Download Length: 1269 bp
>NTDB_id=67448 LEN_RS05230 WP_096376939.1 1224570..1225838(-) (pilC) [Lysobacter enzymogenes strain M497-1]
ATGTCCGCGACCCGATCGACCACTCGCGCCGCCACTAAGACCGCCCCCGCGGTCCGTCGCGAAAACCCCCTGGAAATGTT
CGTCTGGCAGGGCACCGACAAGCGCGGCGTCAAGATGAAGGGCGAGCAGTCGGCCAAGAATGCCAATCTGTTGCGCGCAG
AGTTGCGTCGCCAGGGCATCACCCCGGACGTGGTCAAGCCCAAGGGCAAGCCGCTGTTCGGCGCGTCCGGCAAGCGCATC
ACCCCCGGCGACATCGCCATCTTCAGCCGCCAGATCGCCACGATGATGAAGTCGGGCGTGCCGATCGTGACCTCGCTGGA
GATCATCGGCGAGGGCCACAAGAACCCGCGCATGAAGAAGCTGCTCAACGCCATCCGCGCGGACCTGGAAAGCGGCCTGT
CGCTGTACGAGGCGATGAGCAAGCACCCGGTCCAGTTCGACGAGCTCTACCGCAACCTGGTCAAGGCCGGCGAATCGGCC
GGTGTGCTGGAAACCGTGCTCGACACGGTCGCGACCTACAAGGAAAACATCGAAACCTTGAAGGGCAAGATCAAGAAGGC
GCTGTTCTACCCGGCCACGGTGGTCGCGGTGGCGATCCTGGTCAGCGCGATCCTGCTGATCTTCGTGGTGCCGCAGTTCC
AGGCCACGTTCAAGAGCTTCGGCGCCGACTTGCCGGCGTTCACGCTGATGGTCATCGGCATGAGCGACTTCATGATCCAG
TGGTGGTGGGCGGTGCTGTTGCTGGTGATCGGCGCGGGGGTGGCCTTCATCATGGCCAAGAACCGCTCGCCCGCCTTCGC
CCATTTCCTCGACCGGGCGATGCTGAAGATCCCGGTGGTCGGGCAGATCCTGCACAACGCCGCGGTCGCACGCTTCGCCC
GCACCCTGGCGGTGACCTTCCGCGCCGGCGTGCCGCTGGTGGAAGCGCTGGACACCGTCGCCGGCGCCACCGGCAACGTG
GTCTACGAGAAGGCGGTCTATCGCATCCGCGACGACGTCTCGGTCGGCTATCAGGTCAACATGGCGATGAAGCAGGTCAA
CCTGTTCCCGCACATGGTGATCCAGATGACCGCGATCGGCGAAGAGGCCGGCGCGCTCGACACCATGCTGGTCAAGGTCG
CCGAGTTCTACGAGCAGGAGGTCAACAACGCCGTCGACGCACTGTCGAGCCTGCTGGAACCGCTGATCATGATCATCCTG
GGCGTCATCGTCGGCGGCATGGTGGTAGCGATGTACCTGCCGATCTTCAAACTGGCCGCGACGATCTGA
ATGTCCGCGACCCGATCGACCACTCGCGCCGCCACTAAGACCGCCCCCGCGGTCCGTCGCGAAAACCCCCTGGAAATGTT
CGTCTGGCAGGGCACCGACAAGCGCGGCGTCAAGATGAAGGGCGAGCAGTCGGCCAAGAATGCCAATCTGTTGCGCGCAG
AGTTGCGTCGCCAGGGCATCACCCCGGACGTGGTCAAGCCCAAGGGCAAGCCGCTGTTCGGCGCGTCCGGCAAGCGCATC
ACCCCCGGCGACATCGCCATCTTCAGCCGCCAGATCGCCACGATGATGAAGTCGGGCGTGCCGATCGTGACCTCGCTGGA
GATCATCGGCGAGGGCCACAAGAACCCGCGCATGAAGAAGCTGCTCAACGCCATCCGCGCGGACCTGGAAAGCGGCCTGT
CGCTGTACGAGGCGATGAGCAAGCACCCGGTCCAGTTCGACGAGCTCTACCGCAACCTGGTCAAGGCCGGCGAATCGGCC
GGTGTGCTGGAAACCGTGCTCGACACGGTCGCGACCTACAAGGAAAACATCGAAACCTTGAAGGGCAAGATCAAGAAGGC
GCTGTTCTACCCGGCCACGGTGGTCGCGGTGGCGATCCTGGTCAGCGCGATCCTGCTGATCTTCGTGGTGCCGCAGTTCC
AGGCCACGTTCAAGAGCTTCGGCGCCGACTTGCCGGCGTTCACGCTGATGGTCATCGGCATGAGCGACTTCATGATCCAG
TGGTGGTGGGCGGTGCTGTTGCTGGTGATCGGCGCGGGGGTGGCCTTCATCATGGCCAAGAACCGCTCGCCCGCCTTCGC
CCATTTCCTCGACCGGGCGATGCTGAAGATCCCGGTGGTCGGGCAGATCCTGCACAACGCCGCGGTCGCACGCTTCGCCC
GCACCCTGGCGGTGACCTTCCGCGCCGGCGTGCCGCTGGTGGAAGCGCTGGACACCGTCGCCGGCGCCACCGGCAACGTG
GTCTACGAGAAGGCGGTCTATCGCATCCGCGACGACGTCTCGGTCGGCTATCAGGTCAACATGGCGATGAAGCAGGTCAA
CCTGTTCCCGCACATGGTGATCCAGATGACCGCGATCGGCGAAGAGGCCGGCGCGCTCGACACCATGCTGGTCAAGGTCG
CCGAGTTCTACGAGCAGGAGGTCAACAACGCCGTCGACGCACTGTCGAGCCTGCTGGAACCGCTGATCATGATCATCCTG
GGCGTCATCGTCGGCGGCATGGTGGTAGCGATGTACCTGCCGATCTTCAAACTGGCCGCGACGATCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Legionella pneumophila strain ERS1305867 |
56.436 |
95.735 |
0.54 |
| pilC | Pseudomonas stutzeri DSM 10701 |
56.675 |
94.076 |
0.533 |
| pilC | Acinetobacter baylyi ADP1 |
51.961 |
96.682 |
0.502 |
| pilC | Acinetobacter baumannii D1279779 |
51.843 |
96.445 |
0.5 |
| pilG | Neisseria gonorrhoeae MS11 |
43.216 |
94.313 |
0.408 |
| pilG | Neisseria meningitidis 44/76-A |
43.216 |
94.313 |
0.408 |
| pilC | Vibrio cholerae strain A1552 |
40.594 |
95.735 |
0.389 |
| pilC | Vibrio campbellii strain DS40M4 |
40.852 |
94.55 |
0.386 |
| pilC | Thermus thermophilus HB27 |
36.73 |
100 |
0.367 |