Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   H7R48_RS17875 Genome accession   NZ_AP022298
Coordinates   3731517..3732122 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain BEC1-S17-ESBL-09     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3726517..3737122
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7R48_RS17855 (BE1S17E09_34750) aes 3726658..3727617 (+) 960 WP_000801809.1 acetyl esterase -
  H7R48_RS17860 (BE1S17E09_34760) hemH 3727614..3728576 (-) 963 WP_001250117.1 ferrochelatase -
  H7R48_RS17865 (BE1S17E09_34770) adk 3728708..3729352 (-) 645 WP_001220233.1 adenylate kinase -
  H7R48_RS17870 (BE1S17E09_34780) htpG 3729533..3731407 (-) 1875 WP_000678202.1 molecular chaperone HtpG -
  H7R48_RS17875 (BE1S17E09_34790) recR 3731517..3732122 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  H7R48_RS17880 (BE1S17E09_34800) ybaB 3732122..3732451 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  H7R48_RS17885 (BE1S17E09_34810) dnaX 3732504..3734435 (-) 1932 WP_000122015.1 DNA polymerase III subunit gamma/tau -
  H7R48_RS17890 (BE1S17E09_34820) apt 3734564..3735115 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  H7R48_RS17895 (BE1S17E09_34830) ybaN 3735268..3735645 (-) 378 WP_001188905.1 DUF454 family protein -
  H7R48_RS17900 (BE1S17E09_34840) priC 3735715..3736242 (+) 528 WP_000844856.1 primosomal replication protein N'' -
  H7R48_RS17905 (BE1S17E09_34850) rsmS 3736256..3736417 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=67449 H7R48_RS17875 WP_001195025.1 3731517..3732122(-) (recR) [Escherichia coli strain BEC1-S17-ESBL-09]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=67449 H7R48_RS17875 WP_001195025.1 3731517..3732122(-) (recR) [Escherichia coli strain BEC1-S17-ESBL-09]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGACACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment