Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   lgb_RS01380 Genome accession   NZ_CP094882
Coordinates   279090..279479 (+) Length   129 a.a.
NCBI ID   WP_019293857.1    Uniprot ID   -
Organism   Lactococcus petauri strain B1726     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 274090..284479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  lgb_RS01345 (lgb_00264) - 274809..275318 (+) 510 WP_019294207.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  lgb_RS01350 (lgb_00265) - 275308..275712 (+) 405 WP_019294206.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  lgb_RS01355 (lgb_00266) - 275729..276412 (-) 684 WP_242810646.1 phosphatase PAP2 family protein -
  lgb_RS01360 (lgb_00267) pepA 276523..277590 (-) 1068 WP_019291359.1 glutamyl aminopeptidase -
  lgb_RS01365 (lgb_00268) - 277791..278078 (+) 288 WP_029343529.1 hypothetical protein -
  lgb_RS01370 (lgb_00269) - 278075..278395 (+) 321 WP_019291357.1 thioredoxin family protein -
  lgb_RS01375 (lgb_00270) ytpR 278397..279020 (+) 624 WP_019293856.1 YtpR family tRNA-binding protein -
  lgb_RS01380 (lgb_00271) ssbB 279090..279479 (+) 390 WP_019293857.1 single-stranded DNA-binding protein Machinery gene
  lgb_RS01385 (lgb_00272) - 279536..280066 (+) 531 WP_019293858.1 ClbS/DfsB family four-helix bundle protein -
  lgb_RS01390 (lgb_00273) groES 280184..280465 (+) 282 WP_019291353.1 co-chaperone GroES -
  lgb_RS01395 (lgb_00274) groL 280495..282120 (+) 1626 WP_003133890.1 chaperonin GroEL -
  lgb_RS01400 (lgb_00275) - 282170..282982 (-) 813 WP_019293859.1 MBL fold metallo-hydrolase -
  lgb_RS01405 (lgb_00276) - 282979..284397 (-) 1419 WP_242810645.1 ATP-binding protein -

Sequence

Protein


Download         Length: 129 a.a.        Molecular weight: 14706.87 Da        Isoelectric Point: 9.6892

>NTDB_id=673928 lgb_RS01380 WP_019293857.1 279090..279479(+) (ssbB) [Lactococcus petauri strain B1726]
MNKTLLVGRLVADPELTKTSNGKSLLRINLAVKRRYKNASGEKNTDFVALVFWEKQAEHCTSYAKKGALLAVEGEIRTRN
YVDKQEQKRYVTEVLVKTFDLLESRATVAMRQDSIENSALNLKEDELPF

Nucleotide


Download         Length: 390 bp        

>NTDB_id=673928 lgb_RS01380 WP_019293857.1 279090..279479(+) (ssbB) [Lactococcus petauri strain B1726]
ATGAATAAAACGTTACTTGTTGGCCGACTCGTTGCAGATCCAGAACTCACTAAAACATCTAATGGGAAAAGCCTATTGAG
AATAAATCTTGCTGTCAAACGACGCTATAAAAATGCTTCAGGTGAAAAAAATACAGACTTTGTCGCTTTGGTCTTTTGGG
AGAAACAGGCGGAACACTGTACATCCTATGCTAAAAAAGGCGCCCTACTTGCTGTGGAAGGGGAGATACGAACCAGAAAT
TATGTGGACAAGCAGGAACAAAAACGCTATGTGACAGAAGTGTTGGTAAAAACTTTTGACCTTTTGGAAAGTCGCGCGAC
AGTTGCCATGCGACAAGATTCTATAGAAAATAGTGCTCTTAATTTAAAAGAAGATGAATTACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Lactococcus lactis subsp. cremoris KW2

57.364

100

0.574
  ssbB/cilA Streptococcus pneumoniae TIGR4

52.308

100

0.527
  ssbB/cilA Streptococcus mitis NCTC 12261

52.308

100

0.527
  ssbB/cilA Streptococcus pneumoniae R6

51.538

100

0.519
  ssbA Streptococcus mutans UA159

51.538

100

0.519
  ssbB/cilA Streptococcus mitis SK321

51.538

100

0.519
  ssbB/cilA Streptococcus pneumoniae D39

51.538

100

0.519
  ssbB Streptococcus sobrinus strain NIDR 6715-7

51.538

100

0.519
  ssbB/cilA Streptococcus pneumoniae Rx1

51.538

100

0.519
  ssb Latilactobacillus sakei subsp. sakei 23K

45.536

86.822

0.395