Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   MTP21_RS11835 Genome accession   NZ_CP094880
Coordinates   2622594..2623817 (+) Length   407 a.a.
NCBI ID   WP_243974790.1    Uniprot ID   -
Organism   Vibrio natriegens strain WPAGA4     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2617594..2628817
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTP21_RS11815 ampD 2618630..2619175 (-) 546 WP_243974775.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  MTP21_RS11820 nadC 2619268..2620155 (+) 888 WP_243974777.1 carboxylating nicotinate-nucleotide diphosphorylase -
  MTP21_RS11825 - 2620414..2620878 (+) 465 WP_243974779.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  MTP21_RS11830 pilB 2620878..2622563 (+) 1686 WP_243974788.1 type IV-A pilus assembly ATPase PilB Machinery gene
  MTP21_RS11835 pilC 2622594..2623817 (+) 1224 WP_243974790.1 type II secretion system F family protein Machinery gene
  MTP21_RS11840 pilD 2623885..2624754 (+) 870 WP_243974794.1 A24 family peptidase Machinery gene
  MTP21_RS11845 coaE 2624755..2625369 (+) 615 WP_014232954.1 dephospho-CoA kinase -
  MTP21_RS11850 zapD 2625396..2626136 (+) 741 WP_014232955.1 cell division protein ZapD -
  MTP21_RS11855 yacG 2626210..2626404 (+) 195 WP_014232956.1 DNA gyrase inhibitor YacG -
  MTP21_RS11860 rplS 2626771..2627124 (-) 354 WP_005379971.1 50S ribosomal protein L19 -
  MTP21_RS11865 trmD 2627165..2627926 (-) 762 WP_014232957.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  MTP21_RS11870 rimM 2627954..2628502 (-) 549 WP_014232958.1 ribosome maturation factor RimM -
  MTP21_RS11875 rpsP 2628533..2628781 (-) 249 WP_005379962.1 30S ribosomal protein S16 -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 45113.36 Da        Isoelectric Point: 10.3231

>NTDB_id=673891 MTP21_RS11835 WP_243974790.1 2622594..2623817(+) (pilC) [Vibrio natriegens strain WPAGA4]
MKTTTPQLKNFRWKGINSSGKKTSGQTLAMSEVEVRERLSAQHIKIKKLKKSSISFLTKMSHRVKGKDITVFTRQISTML
VTGVPLVQALKLVSNNHKKAEMKSILMSVTRAVEAGTPMSKAMRTASTHFDALYTDLIATGELSGNLAEVFERLATYREK
SEELRAKVIKALIYPAMVMLVALGVSYLMLTQVIPEFEKMFSGFGADLPWFTRQVLDLSAWMQNWGSFIALGTLSLIISA
RILVKRSDSFRLMMDRAILRIPVLGAVLSKAAIAKFSRTLATSFSAGIPILTSLKTTSKTSGNLHYQLAVEEVYRDTAAG
MPMYVAMRNCDVFPELVLQMVMIGEESGRLDEMLNKVATIYEFEVDNTVDNLSKILEPLIIVFLGVVVGGLVTAMYLPIF
NLMSVLG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=673891 MTP21_RS11835 WP_243974790.1 2622594..2623817(+) (pilC) [Vibrio natriegens strain WPAGA4]
ATGAAAACGACGACCCCACAACTAAAGAACTTCCGCTGGAAAGGCATTAATAGCTCAGGAAAAAAAACTTCTGGGCAAAC
GCTGGCCATGAGCGAAGTGGAAGTACGCGAACGACTCAGCGCTCAGCACATAAAAATAAAAAAACTGAAAAAAAGCAGTA
TTTCTTTTTTAACCAAAATGAGCCATCGGGTAAAAGGCAAAGACATCACCGTTTTTACTCGCCAAATTTCGACTATGCTG
GTTACCGGTGTCCCACTCGTTCAGGCTTTGAAACTAGTCTCCAATAATCATAAAAAAGCCGAGATGAAGTCTATTTTAAT
GAGCGTAACTCGAGCGGTTGAAGCGGGTACGCCGATGTCAAAAGCAATGCGCACGGCCAGCACACATTTTGACGCACTTT
ATACTGACCTCATCGCAACAGGAGAACTGTCAGGCAATCTGGCAGAAGTCTTTGAACGACTGGCCACTTATCGTGAAAAA
AGTGAGGAACTCAGAGCGAAAGTCATCAAGGCCCTGATCTACCCAGCCATGGTTATGTTGGTTGCGCTCGGCGTGTCCTA
TCTCATGCTCACTCAAGTTATCCCTGAGTTTGAAAAAATGTTTTCTGGGTTTGGTGCAGATTTACCTTGGTTCACCAGAC
AAGTACTAGACTTGTCTGCGTGGATGCAAAATTGGGGTTCATTCATCGCTCTTGGGACACTTAGCCTAATTATATCAGCA
AGAATACTGGTCAAACGTTCTGATTCTTTTCGCTTGATGATGGATCGAGCCATATTGAGAATTCCCGTTCTTGGCGCTGT
GTTGTCCAAGGCGGCGATTGCTAAATTTAGCCGAACCCTGGCCACCAGCTTCAGTGCTGGTATTCCTATTCTGACCAGTT
TAAAAACCACCTCAAAAACATCAGGAAACCTGCACTATCAGCTGGCAGTAGAAGAGGTCTATCGTGATACAGCCGCTGGT
ATGCCAATGTATGTCGCGATGCGTAACTGCGATGTTTTCCCTGAATTAGTGCTACAAATGGTGATGATTGGAGAAGAATC
AGGCAGGCTTGATGAGATGCTCAATAAAGTCGCAACTATTTATGAATTCGAAGTAGATAATACCGTCGATAACCTAAGTA
AGATTCTTGAACCGCTGATTATTGTTTTTCTTGGTGTGGTCGTTGGTGGATTAGTGACAGCAATGTATCTGCCAATCTTT
AACTTAATGAGCGTATTAGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio campbellii strain DS40M4

85.995

100

0.86
  pilC Vibrio cholerae strain A1552

73.086

99.509

0.727
  pilC Acinetobacter baylyi ADP1

41.5

98.28

0.408
  pilC Legionella pneumophila strain ERS1305867

40.786

100

0.408
  pilC Acinetobacter baumannii D1279779

40.5

98.28

0.398
  pilC Pseudomonas stutzeri DSM 10701

40.399

98.526

0.398
  pilG Neisseria gonorrhoeae MS11

39.552

98.771

0.391
  pilG Neisseria meningitidis 44/76-A

39.303

98.771

0.388