Detailed information NTG0673892

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: MTP21_RS11840
• Genome accession: NZ_CP094880
• Coordinates: 2623885..2624754 (+)
• Length: 289 a.a.
• NCBI ID: WP_243974794.1
• Uniprot ID: -
• Organism: Vibrio natriegens strain WPAGA4
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2618885..2629754

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MTP21_RS11820	nadC	2619268..2620155 (+)	888	WP_243974777.1	carboxylating nicotinate-nucleotide diphosphorylase	-
MTP21_RS11825	-	2620414..2620878 (+)	465	WP_243974779.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
MTP21_RS11830	pilB	2620878..2622563 (+)	1686	WP_243974788.1	type IV-A pilus assembly ATPase PilB	Machinery gene
MTP21_RS11835	pilC	2622594..2623817 (+)	1224	WP_243974790.1	type II secretion system F family protein	Machinery gene
MTP21_RS11840	pilD	2623885..2624754 (+)	870	WP_243974794.1	A24 family peptidase	Machinery gene
MTP21_RS11845	coaE	2624755..2625369 (+)	615	WP_014232954.1	dephospho-CoA kinase	-
MTP21_RS11850	zapD	2625396..2626136 (+)	741	WP_014232955.1	cell division protein ZapD	-
MTP21_RS11855	yacG	2626210..2626404 (+)	195	WP_014232956.1	DNA gyrase inhibitor YacG	-
MTP21_RS11860	rplS	2626771..2627124 (-)	354	WP_005379971.1	50S ribosomal protein L19	-
MTP21_RS11865	trmD	2627165..2627926 (-)	762	WP_014232957.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
MTP21_RS11870	rimM	2627954..2628502 (-)	549	WP_014232958.1	ribosome maturation factor RimM	-
MTP21_RS11875	rpsP	2628533..2628781 (-)	249	WP_005379962.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32322.39 Da
• Isoelectric Point: 6.4408

>NTDB_id=673892 MTP21_RS11840 WP_243974794.1 2623885..2624754(+) (pilD) [Vibrio natriegens strain WPAGA4]
MEVFQYYPWLFVVFAVVFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYNIESPKEVLTLSVPRSSCQQCGTPIRIR
DNIPVISWLLLKGKCHNCSAPISARYPLVEILTAACSGYVAFHFGFSYFTIALIFFTFILIAATFIDLDTMLLPDQLTLP
LTWAGIALALFEVSPVSLQDAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQALPMIILLSSIVGV
IFGIIQLRLQKKGIEKAFPFGPYLAIAGWVSLLWGDQILNWYFTSILGA

Nucleotide

• Length: 870 bp

>NTDB_id=673892 MTP21_RS11840 WP_243974794.1 2623885..2624754(+) (pilD) [Vibrio natriegens strain WPAGA4]
ATGGAAGTATTTCAGTACTACCCATGGTTATTCGTTGTATTCGCCGTGGTTTTTGGTTTGATCGTGGGAAGTTTTCTCAA
TGTCGTTATCTATCGACTTCCAAAAATCATGGAGCTGGAATGGCGCCGTGAATGTGCTGAGTCTTTTCCTGAATACAATA
TTGAATCACCTAAAGAAGTACTCACATTAAGCGTACCCCGCTCATCTTGCCAACAGTGCGGTACTCCGATTCGCATTCGC
GATAACATCCCAGTGATCAGTTGGCTACTTCTAAAAGGTAAATGCCACAACTGTAGCGCACCGATCAGCGCCAGATACCC
ACTTGTAGAAATACTGACGGCAGCCTGCTCCGGCTACGTTGCGTTTCATTTTGGATTCAGCTATTTCACTATTGCGCTAA
TATTCTTTACTTTCATTCTGATCGCAGCGACGTTTATCGATCTCGATACCATGCTGCTGCCCGATCAATTAACATTGCCA
TTAACTTGGGCTGGCATTGCTCTAGCATTGTTCGAAGTTAGTCCTGTTAGTCTGCAAGATGCCGTGATCGGTGCAATCGC
TGGCTATTTATGTCTCTGGTCTGTTTATTGGGGCTTTAAGTTGCTTACTGGCAAGGAAGGCATGGGCTATGGCGACTTTA
AGCTACTCGCAGCGCTTGGCGCATGGCTGGGTTGGCAAGCTTTACCAATGATCATTTTGCTTTCTTCCATCGTAGGCGTC
ATATTTGGAATAATTCAGCTACGATTGCAGAAGAAAGGGATCGAAAAGGCCTTCCCTTTCGGTCCTTACTTAGCGATTGC
CGGATGGGTAAGTTTACTCTGGGGTGATCAAATTCTAAATTGGTATTTCACATCAATTCTAGGAGCGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	88.889	99.654	0.886
pilD	Vibrio cholerae strain A1552	73.264	99.654	0.73
pilD	Acinetobacter baumannii D1279779	53.43	95.848	0.512
pilD	Acinetobacter nosocomialis M2	53.069	95.848	0.509
pilD	Neisseria gonorrhoeae MS11	46.739	95.502	0.446