Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   MT343_RS04460 Genome accession   NZ_CP094879
Coordinates   989200..990426 (-) Length   408 a.a.
NCBI ID   WP_145469680.1    Uniprot ID   A0A558NIZ9
Organism   Thalassolituus sp. C2-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 984200..995426
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MT343_RS04435 - 984679..985617 (+) 939 WP_145469685.1 DUF808 domain-containing protein -
  MT343_RS04440 - 985852..987375 (+) 1524 WP_145469684.1 hypothetical protein -
  MT343_RS04445 yacG 987451..987651 (-) 201 WP_145469683.1 DNA gyrase inhibitor YacG -
  MT343_RS04450 coaE 987706..988305 (-) 600 WP_145469682.1 dephospho-CoA kinase -
  MT343_RS04455 pilD 988322..989200 (-) 879 WP_145469681.1 A24 family peptidase Machinery gene
  MT343_RS04460 pilC 989200..990426 (-) 1227 WP_145469680.1 type II secretion system F family protein Machinery gene
  MT343_RS04465 pilB 990475..992172 (-) 1698 WP_145469679.1 type IV-A pilus assembly ATPase PilB Machinery gene
  MT343_RS19580 - 992307..992951 (-) 645 WP_145469678.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  MT343_RS04475 - 993205..993870 (-) 666 WP_145469677.1 hypothetical protein -
  MT343_RS04480 nadC 993905..994768 (-) 864 WP_145469676.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44370.07 Da        Isoelectric Point: 9.4616

>NTDB_id=673848 MT343_RS04460 WP_145469680.1 989200..990426(-) (pilC) [Thalassolituus sp. C2-1]
MAKQIKNSAFAWEGINRRGQTIKGEMSGQNAAMVKAQLRKQGVNPLKVRKVAQPLLGMGGLGKKKIKSADITFFTRQMAT
MIKAGVPLVQSFDIVADGIDNPSMKELILGLRDTVSAGNDFASALKQHPEYFDDLTCNLVESGEQAGALEAMLEKVAIYK
EKTEVLKAKIKKAMTYPLATLVVAFVVTAILLIKVVPTFDDMFRSFGSQLPAPTQFVVYLSEQAQAYYLHVLGVLAVAGV
FFSQAMKRSPAFRNNFERLTLKLPVFGDLIRKAAVARYARVLSTTFAAGVPLVEALESVAGAVGNVVYREAVLKIRDEVS
SGQQMHFAMRSTGVFPNMVVQMTSIGEESGALDAMLDKAATYFEDEVDNAVDNMTALLEPMIMAFLGVVIGGLIIAMYLP
IFEMGKAI

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=673848 MT343_RS04460 WP_145469680.1 989200..990426(-) (pilC) [Thalassolituus sp. C2-1]
ATGGCTAAGCAAATAAAGAACAGCGCCTTTGCCTGGGAAGGCATCAATCGCCGCGGCCAGACGATTAAGGGCGAGATGAG
CGGCCAAAATGCCGCTATGGTCAAAGCCCAGCTGCGTAAGCAGGGTGTTAATCCGCTGAAGGTCCGTAAAGTTGCACAAC
CCCTGCTGGGAATGGGTGGGCTGGGCAAGAAAAAAATCAAATCCGCTGATATCACCTTTTTTACCCGACAGATGGCGACC
ATGATCAAAGCTGGTGTTCCTCTGGTACAGTCATTTGATATCGTGGCCGATGGCATTGATAACCCGTCGATGAAAGAGCT
TATATTGGGTCTGCGTGATACCGTTTCTGCCGGTAATGACTTCGCCTCTGCGCTGAAACAACATCCTGAGTACTTCGACG
ACCTGACCTGTAATCTGGTCGAGTCCGGCGAGCAGGCCGGTGCGCTTGAAGCCATGCTGGAAAAAGTGGCTATCTACAAA
GAAAAAACGGAAGTACTGAAAGCCAAAATCAAGAAGGCGATGACCTACCCCCTTGCAACTCTGGTAGTGGCTTTCGTGGT
AACCGCTATCCTGCTGATTAAAGTGGTACCAACCTTTGATGATATGTTCCGCAGTTTTGGTTCACAACTGCCGGCACCGA
CACAGTTTGTGGTTTATCTGTCCGAACAGGCGCAGGCCTATTATCTGCATGTATTGGGCGTTCTTGCCGTTGCCGGGGTG
TTCTTTTCACAGGCAATGAAACGCTCACCGGCTTTCCGCAATAACTTTGAGCGCCTCACCCTTAAGCTTCCCGTGTTCGG
CGATCTTATCCGCAAGGCGGCGGTTGCCCGTTATGCCCGGGTTCTGTCGACCACCTTTGCTGCGGGTGTGCCCTTAGTAG
AAGCACTGGAGTCGGTTGCCGGTGCGGTAGGCAATGTTGTTTACCGCGAAGCCGTACTGAAAATCCGTGATGAAGTATCC
TCTGGCCAGCAGATGCACTTTGCGATGCGTTCGACCGGTGTGTTCCCCAATATGGTGGTACAGATGACCAGTATCGGTGA
GGAATCCGGTGCTCTTGATGCCATGCTGGATAAAGCCGCCACTTATTTCGAAGATGAAGTGGATAACGCAGTCGACAACA
TGACCGCTCTGCTGGAGCCTATGATTATGGCATTCCTCGGTGTGGTAATCGGTGGTCTGATCATCGCAATGTACCTGCCA
ATCTTCGAGATGGGTAAAGCGATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A558NIZ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

63.793

99.51

0.635
  pilC Acinetobacter baumannii D1279779

58.145

97.794

0.569
  pilC Acinetobacter baylyi ADP1

56.892

97.794

0.556
  pilC Legionella pneumophila strain ERS1305867

52.58

99.755

0.525
  pilG Neisseria gonorrhoeae MS11

44.059

99.02

0.436
  pilG Neisseria meningitidis 44/76-A

44.059

99.02

0.436
  pilC Vibrio cholerae strain A1552

41

98.039

0.402
  pilC Vibrio campbellii strain DS40M4

39.312

99.755

0.392