Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   MT343_RS04455 Genome accession   NZ_CP094879
Coordinates   988322..989200 (-) Length   292 a.a.
NCBI ID   WP_145469681.1    Uniprot ID   A0A558NJ03
Organism   Thalassolituus sp. C2-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 983322..994200
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MT343_RS04430 - 984124..984660 (+) 537 WP_145469686.1 PadR family transcriptional regulator -
  MT343_RS04435 - 984679..985617 (+) 939 WP_145469685.1 DUF808 domain-containing protein -
  MT343_RS04440 - 985852..987375 (+) 1524 WP_145469684.1 hypothetical protein -
  MT343_RS04445 yacG 987451..987651 (-) 201 WP_145469683.1 DNA gyrase inhibitor YacG -
  MT343_RS04450 coaE 987706..988305 (-) 600 WP_145469682.1 dephospho-CoA kinase -
  MT343_RS04455 pilD 988322..989200 (-) 879 WP_145469681.1 A24 family peptidase Machinery gene
  MT343_RS04460 pilC 989200..990426 (-) 1227 WP_145469680.1 type II secretion system F family protein Machinery gene
  MT343_RS04465 pilB 990475..992172 (-) 1698 WP_145469679.1 type IV-A pilus assembly ATPase PilB Machinery gene
  MT343_RS19580 - 992307..992951 (-) 645 WP_145469678.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  MT343_RS04475 - 993205..993870 (-) 666 WP_145469677.1 hypothetical protein -

Sequence

Protein


Download         Length: 292 a.a.        Molecular weight: 32083.35 Da        Isoelectric Point: 7.6345

>NTDB_id=673847 MT343_RS04455 WP_145469681.1 988322..989200(-) (pilD) [Thalassolituus sp. C2-1]
MKLLQLLADNLVWLAIFITLFSLLIGSFLNVVILRFPVMMFRSWKQDCLEMDSNLPKHPAIDDLSKPFNLLKPDSHCPKC
QAPVKAWQNIPLLSWVLLRGKCAGCGAPIGLRYPAVEIATAILSTALLLVYPWGWQLAAMLVFTWLLISMSVIDIDHQIL
PDTMTLSLLWLGLLVNSQGLFTDLESAVYGAAAGYLALWSVFWIFKLVTGKEGMGYGDFKLLAALGAWLGVQSLPLIILL
SSVVGAVVGIAGIIILGRDKNVPIPFGPYLAAAGWIAALWGNDISQWYLGRF

Nucleotide


Download         Length: 879 bp        

>NTDB_id=673847 MT343_RS04455 WP_145469681.1 988322..989200(-) (pilD) [Thalassolituus sp. C2-1]
ATGAAACTGCTGCAACTGCTGGCCGACAACCTTGTCTGGCTGGCTATTTTTATCACGCTGTTCAGCCTCCTTATAGGCAG
CTTCCTCAATGTCGTGATACTGCGCTTTCCGGTCATGATGTTCCGCAGCTGGAAGCAGGATTGCCTGGAAATGGACAGCA
ATCTGCCCAAGCACCCGGCCATTGACGATCTGAGTAAGCCCTTCAACCTGTTAAAGCCTGACTCACACTGCCCCAAATGT
CAGGCTCCGGTAAAAGCCTGGCAGAATATTCCGCTGCTGAGCTGGGTCTTACTGCGCGGTAAGTGTGCCGGTTGTGGCGC
CCCTATAGGCCTGCGTTATCCGGCGGTGGAAATTGCCACCGCCATTCTGAGTACGGCGTTATTACTGGTGTATCCCTGGG
GCTGGCAACTGGCCGCTATGCTGGTGTTCACCTGGCTGTTAATCAGCATGTCGGTGATTGATATCGACCATCAGATTTTG
CCCGACACCATGACGTTAAGCCTTCTGTGGCTGGGTCTTCTGGTCAATAGTCAGGGATTATTTACCGATCTGGAAAGTGC
GGTATACGGCGCAGCTGCAGGCTATCTGGCATTGTGGAGCGTGTTCTGGATCTTCAAGCTGGTTACCGGCAAAGAGGGAA
TGGGTTACGGTGACTTCAAATTGCTGGCCGCCCTTGGCGCCTGGCTCGGCGTTCAAAGCCTGCCGCTGATCATCCTGCTC
TCTTCCGTGGTGGGCGCTGTGGTTGGTATTGCCGGCATTATTATTCTCGGACGGGACAAAAATGTTCCGATTCCTTTTGG
CCCCTATCTGGCCGCCGCTGGCTGGATTGCCGCCCTCTGGGGCAATGACATCAGCCAGTGGTATCTGGGCCGTTTCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(20-129)

Type IV leader peptidase family (Peptidase_A24)

(141-250)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A558NJ03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter baumannii D1279779

51.418

96.575

0.497
  pilD Acinetobacter nosocomialis M2

51.418

96.575

0.497
  pilD Vibrio cholerae strain A1552

49.455

94.178

0.466
  pilD Neisseria gonorrhoeae MS11

51.751

88.014

0.455
  pilD Vibrio campbellii strain DS40M4

46.931

94.863

0.445