Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OHB06_RS22540 Genome accession   NZ_CP109312
Coordinates   5042358..5043353 (-) Length   331 a.a.
NCBI ID   WP_266438121.1    Uniprot ID   A0ABP7QB93
Organism   Streptomyces sp. NBC_01604     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 5037358..5048353
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHB06_RS22520 (OHB06_22545) - 5037410..5038171 (-) 762 WP_345561260.1 DeoR/GlpR family DNA-binding transcription regulator -
  OHB06_RS22525 (OHB06_22550) - 5038381..5039889 (-) 1509 WP_406493552.1 MFS transporter -
  OHB06_RS22530 (OHB06_22555) - 5039953..5040966 (+) 1014 WP_266448390.1 YafY family protein -
  OHB06_RS22535 (OHB06_22560) - 5041206..5041811 (-) 606 WP_266448387.1 TetR family transcriptional regulator -
  OHB06_RS22540 (OHB06_22565) rpoS 5042358..5043353 (-) 996 WP_266438121.1 RNA polymerase sigma factor RpoD/SigA Regulator
  OHB06_RS22545 (OHB06_22570) - 5043525..5044043 (+) 519 WP_329339829.1 N-acetyltransferase family protein -
  OHB06_RS22550 (OHB06_22575) - 5044070..5044861 (-) 792 WP_266448384.1 dioxygenase -
  OHB06_RS22555 (OHB06_22580) - 5044995..5045513 (+) 519 WP_329339827.1 MarR family transcriptional regulator -
  OHB06_RS22560 (OHB06_22585) - 5045608..5047146 (-) 1539 WP_266438115.1 MFS transporter -
  OHB06_RS22565 (OHB06_22590) - 5047365..5048009 (-) 645 WP_266438113.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 331 a.a.        Molecular weight: 36950.63 Da        Isoelectric Point: 4.9556

>NTDB_id=673849 OHB06_RS22540 WP_266438121.1 5042358..5043353(-) (rpoS) [Streptomyces sp. NBC_01604]
MATRAVARRQSATGGTDAASSVRTHGGEIADRDLVGMYLDEIARTPLLDAAKEVELSQIIEAGVFAQQILDGDEVAKADA
TREELEALVAESERAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYRKGFKFSTYATWWIRQAIT
RSIADQSRTIRLPVHLVEELGRIRRVQREFNREHGRDPEPAEIAAELDSNPARVTDVLDWARDPVSLNMPVDDAGETQFG
DLLEDTSAASPEQSVLTLLRSEELDDLIGRLDQRTASIIKMRYGIEDGRERTLTEVGKEHGLTRERIRQIEKHALLELKK
LARDTGFDAAA

Nucleotide


Download         Length: 996 bp        

>NTDB_id=673849 OHB06_RS22540 WP_266438121.1 5042358..5043353(-) (rpoS) [Streptomyces sp. NBC_01604]
ATGGCAACCCGTGCCGTCGCCCGTCGTCAGTCCGCCACCGGCGGGACCGACGCGGCAAGCAGTGTTCGCACCCATGGCGG
CGAGATCGCCGACCGCGACCTGGTCGGCATGTATCTCGACGAGATCGCGCGTACACCGCTGCTGGACGCCGCCAAGGAAG
TCGAGCTGTCCCAGATCATCGAGGCGGGTGTCTTCGCACAGCAGATTCTCGACGGGGACGAAGTGGCGAAGGCGGACGCG
ACCCGCGAGGAGCTCGAGGCCCTGGTCGCCGAGAGCGAGCGGGCCAAGGACGTCTTCATCCGTTCCAACCTCCGCCTGGT
CGTCGCCGTGGCCCGCCGCTACCCCCGCAGCGGCCTGCCCCTGCTCGACCTGATCCAGGAGGGCAACGCCGGCCTGGTGC
GCGCGGTCGAGAAGTTCGACTACCGCAAGGGCTTCAAGTTCTCGACGTACGCGACCTGGTGGATCCGTCAGGCCATCACC
CGCTCGATAGCGGACCAGTCGCGCACCATCCGCCTGCCCGTCCACCTGGTGGAGGAGCTGGGCCGGATCCGCCGTGTGCA
GCGCGAGTTCAACCGCGAGCACGGCCGCGACCCGGAGCCCGCGGAGATCGCCGCCGAGCTCGACTCGAACCCGGCCCGTG
TCACGGACGTCCTGGACTGGGCCCGCGACCCGGTCTCCCTGAACATGCCGGTGGACGACGCGGGCGAGACCCAGTTCGGC
GACCTCCTGGAGGACACGTCGGCGGCGTCGCCGGAGCAGTCGGTGCTCACGCTGCTGCGCAGCGAGGAACTCGACGACCT
CATCGGGCGCCTCGACCAGCGCACGGCCTCCATCATCAAGATGCGGTACGGCATCGAGGACGGCCGGGAGCGCACGCTGA
CCGAGGTCGGCAAGGAACACGGCCTGACGCGCGAGCGGATCCGCCAGATCGAGAAGCACGCGCTGCTGGAGCTGAAGAAG
CTGGCGCGGGACACCGGGTTCGACGCGGCGGCGTAA

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(178-254)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(33-66)

Sigma-70 region 2 (Sigma70_r2)

(99-168)

Sigma-70, region 4 (Sigma70_r4)

(268-320)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

40.468

90.332

0.366