Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OHB06_RS18950 Genome accession   NZ_CP109312
Coordinates   4238349..4238954 (-) Length   201 a.a.
NCBI ID   WP_266448498.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01604     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 4233349..4243954
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHB06_RS18935 (OHB06_18960) - 4235044..4236054 (+) 1011 WP_329340619.1 hypothetical protein -
  OHB06_RS18940 (OHB06_18965) clpX 4236146..4237432 (-) 1287 WP_217239967.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OHB06_RS18945 (OHB06_18970) clpP 4237617..4238297 (-) 681 WP_323186068.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OHB06_RS18950 (OHB06_18975) clpP 4238349..4238954 (-) 606 WP_266448498.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OHB06_RS18955 (OHB06_18980) tig 4239315..4240712 (-) 1398 WP_266439540.1 trigger factor -
  OHB06_RS18970 (OHB06_18995) - 4241352..4241546 (-) 195 WP_030044846.1 hypothetical protein -
  OHB06_RS18975 (OHB06_19000) - 4242162..4243322 (+) 1161 WP_406492958.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21338.15 Da        Isoelectric Point: 4.5690

>NTDB_id=673838 OHB06_RS18950 WP_266448498.1 4238349..4238954(-) (clpP) [Streptomyces sp. NBC_01604]
MPSAAGDPSIGGGLGDQVYNRLLGERIIFLGQAVDDDIANKITAQLLLLAADPDKDIYLYINSPGGSITAGMAIYDTMQY
IKNDVVTIAMGLAASMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAERLLHTKRRMAELTAFHTGQTME
QITRDSDRDRWFDADEARDYGLIDEVITTAANMPGGGGTGA

Nucleotide


Download         Length: 606 bp        

>NTDB_id=673838 OHB06_RS18950 WP_266448498.1 4238349..4238954(-) (clpP) [Streptomyces sp. NBC_01604]
ATGCCCTCCGCCGCCGGCGACCCCTCCATCGGTGGTGGCCTCGGTGACCAGGTCTACAACCGGCTGCTCGGCGAGCGGAT
CATCTTCCTCGGCCAGGCGGTCGACGACGACATCGCCAACAAGATCACCGCACAGCTCCTGCTCCTTGCCGCTGACCCCG
ACAAGGACATCTACCTCTACATCAACAGCCCCGGCGGCTCGATCACGGCCGGCATGGCGATCTACGACACCATGCAGTAC
ATCAAGAACGACGTGGTGACCATCGCCATGGGCCTCGCCGCCTCCATGGGCCAGTTCCTGCTCAGCGCGGGCACGCCCGG
CAAGCGCTTCGCGCTGCCGAACGCCGAGATCCTGATCCACCAGCCGTCCGCGGGCCTCGCCGGCTCGGCGTCGGACATCA
AGATCCACGCCGAGCGGCTGCTGCACACCAAGCGGCGCATGGCCGAGCTGACGGCCTTCCACACCGGTCAGACCATGGAG
CAGATCACCCGCGACTCCGACCGGGACCGCTGGTTCGACGCCGACGAGGCCAGGGACTACGGCCTCATCGACGAGGTCAT
CACCACGGCCGCCAACATGCCGGGCGGCGGCGGCACCGGGGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(16-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

59.302

85.572

0.507
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

54.598

86.567

0.473
  clpP Lactococcus lactis subsp. cremoris KW2

54.335

86.07

0.468
  clpP Streptococcus mutans UA159

54.335

86.07

0.468
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

53.757

86.07

0.463
  clpP Streptococcus pyogenes JRS4

52.601

86.07

0.453
  clpP Streptococcus pyogenes MGAS315

52.601

86.07

0.453
  clpP Streptococcus thermophilus LMG 18311

51.724

86.567

0.448
  clpP Streptococcus thermophilus LMD-9

51.724

86.567

0.448
  clpP Streptococcus pneumoniae Rx1

51.445

86.07

0.443
  clpP Streptococcus pneumoniae D39

51.445

86.07

0.443
  clpP Streptococcus pneumoniae R6

51.445

86.07

0.443
  clpP Streptococcus pneumoniae TIGR4

51.445

86.07

0.443