Detailed information NTG0673836

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: OHB06_RS18940
• Genome accession: NZ_CP109312
• Coordinates: 4236146..4237432 (-)
• Length: 428 a.a.
• NCBI ID: WP_217239967.1
• Uniprot ID: -
• Organism: Streptomyces sp. NBC_01604
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 4231146..4242432

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OHB06_RS18930 (OHB06_18955)	-	4232283..4234907 (-)	2625	WP_406492955.1	valine--tRNA ligase	-
OHB06_RS18935 (OHB06_18960)	-	4235044..4236054 (+)	1011	WP_329340619.1	hypothetical protein	-
OHB06_RS18940 (OHB06_18965)	clpX	4236146..4237432 (-)	1287	WP_217239967.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
OHB06_RS18945 (OHB06_18970)	clpP	4237617..4238297 (-)	681	WP_323186068.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OHB06_RS18950 (OHB06_18975)	clpP	4238349..4238954 (-)	606	WP_266448498.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OHB06_RS18955 (OHB06_18980)	tig	4239315..4240712 (-)	1398	WP_266439540.1	trigger factor	-
OHB06_RS18970 (OHB06_18995)	-	4241352..4241546 (-)	195	WP_030044846.1	hypothetical protein	-

Sequence

Protein

• Length: 428 a.a.
• Molecular weight: 46802.60 Da
• Isoelectric Point: 4.7838

>NTDB_id=673836 OHB06_RS18940 WP_217239967.1 4236146..4237432(-) (clpX) [Streptomyces sp. NBC_01604]
MARIGDGGDLLKCSFCGKSQKQVKKLIAGPGVYICDECIDLCNEIIEEELAETSEVRWEELPKPREIYEFLEGYVVGQEP
AKKALSVAVYNHYKRVQAGENGGAQGRDDAIELAKSNILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGED
VENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQ
IDTTNVLFIVGGAFAGLEKLIESRAGAKGIGFGATIRSKRELEAKDQFESVMPEDLVKFGMIPEFIGRLPVITSVHNLDR
EALLQILVEPRNALVKQYERLFELDGVELDFEREALEAIADQAILRQTGARGLRAIMEEVLQGVMYEIPSRKDVARVVIT
ADVVHSNVNPTLIPRDARGRGPGEQKTA

Nucleotide

• Length: 1287 bp

>NTDB_id=673836 OHB06_RS18940 WP_217239967.1 4236146..4237432(-) (clpX) [Streptomyces sp. NBC_01604]
GTGGCACGCATCGGTGACGGCGGCGATCTGCTCAAGTGCTCGTTCTGCGGCAAGAGCCAGAAGCAGGTCAAGAAGCTCAT
CGCAGGTCCCGGTGTATACATCTGCGACGAGTGCATCGATCTCTGCAACGAGATCATCGAGGAGGAGCTGGCCGAGACCA
GCGAGGTCCGCTGGGAGGAGCTCCCCAAACCCCGCGAGATCTACGAGTTCCTCGAGGGGTACGTCGTCGGCCAGGAACCG
GCCAAGAAAGCCCTCTCGGTCGCGGTGTACAACCACTACAAGCGGGTCCAGGCCGGCGAGAACGGCGGCGCCCAAGGCCG
CGACGACGCCATCGAGTTGGCGAAGTCCAACATCCTCCTGCTGGGCCCCACGGGCTCCGGCAAGACCCTCCTCGCCCAGA
CCCTGGCCCGCATGCTGAACGTCCCGTTCGCCATCGCCGACGCGACAGCGCTGACGGAGGCCGGCTACGTCGGCGAGGAC
GTCGAGAACATCCTGCTCAAGCTGATCCAGGCGGCCGACTACGACGTCAAGAAGGCCGAGACCGGGATCATCTACATCGA
CGAGATCGACAAGGTCGCCCGTAAGAGCGAAAACCCGTCGATCACCCGCGATGTCAGCGGCGAGGGCGTGCAGCAGGCCC
TGCTGAAGATCCTGGAGGGCACCACCGCCTCGGTCCCGCCCCAGGGGGGCCGCAAGCACCCCCACCAGGAGTTCATCCAG
ATCGACACGACGAACGTGCTGTTCATCGTGGGCGGCGCCTTCGCGGGCCTGGAGAAGCTCATCGAGTCGAGGGCCGGCGC
CAAGGGCATCGGCTTCGGCGCGACGATCCGCTCCAAGCGCGAGCTGGAGGCCAAGGACCAGTTCGAGTCCGTCATGCCCG
AGGACCTGGTCAAGTTCGGCATGATCCCCGAGTTCATCGGCCGGCTCCCGGTCATCACCTCGGTCCACAACCTCGACCGC
GAGGCGCTCCTCCAGATCCTGGTCGAGCCGCGCAACGCGCTCGTCAAGCAGTACGAGCGCCTCTTCGAACTCGACGGTGT
GGAGCTGGACTTCGAGCGCGAGGCCCTGGAGGCCATCGCCGACCAGGCCATCCTGCGCCAGACCGGCGCCCGCGGCCTGC
GCGCCATCATGGAGGAAGTCCTCCAGGGCGTGATGTACGAGATCCCCTCCCGCAAGGACGTGGCGAGGGTCGTCATCACG
GCCGACGTCGTCCACTCGAACGTGAACCCGACGTTGATCCCGCGGGACGCGCGCGGCCGGGGACCGGGCGAGCAGAAGAC
GGCGTAG

Domains

Predicted by InterProScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (318-395)

• ClpX C4-type zinc finger (zf-C4_ClpX) (11-48)

• AAA domain (Cdc48 subfamily) (AAA_2) (115-312)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	62.438	93.925	0.586
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	54.258	96.028	0.521