Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OHB06_RS18945 Genome accession   NZ_CP109312
Coordinates   4237617..4238297 (-) Length   226 a.a.
NCBI ID   WP_323186068.1    Uniprot ID   A0ABP7SV60
Organism   Streptomyces sp. NBC_01604     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 4232617..4243297
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHB06_RS18935 (OHB06_18960) - 4235044..4236054 (+) 1011 WP_329340619.1 hypothetical protein -
  OHB06_RS18940 (OHB06_18965) clpX 4236146..4237432 (-) 1287 WP_217239967.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OHB06_RS18945 (OHB06_18970) clpP 4237617..4238297 (-) 681 WP_323186068.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OHB06_RS18950 (OHB06_18975) clpP 4238349..4238954 (-) 606 WP_266448498.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OHB06_RS18955 (OHB06_18980) tig 4239315..4240712 (-) 1398 WP_266439540.1 trigger factor -
  OHB06_RS18970 (OHB06_18995) - 4241352..4241546 (-) 195 WP_030044846.1 hypothetical protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 24973.41 Da        Isoelectric Point: 4.6426

>NTDB_id=673837 OHB06_RS18945 WP_323186068.1 4237617..4238297(-) (clpP) [Streptomyces sp. NBC_01604]
MNDFPGSGLYDRARAESTVPVAESRYVIPRFVERTSQGIREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDP
DRDISVYINSPGGSFTALTAIYDTMQFVKPDVQTVCMGQAASAAAILLAAGTPGKRMALPNARVLIHQPYSETGRGQVSD
LEIAANEILRMRAQLEDLLAKHSTTPIEKIREDIERDKILTAEDALSYGLIDQIISTRKMNNASVR

Nucleotide


Download         Length: 681 bp        

>NTDB_id=673837 OHB06_RS18945 WP_323186068.1 4237617..4238297(-) (clpP) [Streptomyces sp. NBC_01604]
GTGAACGACTTCCCCGGCAGCGGCCTGTACGACCGCGCACGCGCCGAGAGCACGGTGCCCGTGGCCGAGTCCCGGTACGT
GATCCCGCGCTTCGTCGAGCGCACCTCGCAGGGCATCCGCGAGTACGACCCGTACGCGAAGCTCTTCGAAGAGCGCGTGA
TCTTCCTCGGTGTCCAGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGACCCC
GACCGGGACATCTCGGTCTACATCAACAGCCCCGGCGGTTCCTTCACGGCGCTGACTGCGATCTACGACACCATGCAGTT
CGTGAAGCCCGACGTCCAGACGGTCTGCATGGGCCAGGCCGCCTCGGCCGCCGCCATCCTGCTGGCCGCCGGTACGCCGG
GCAAGCGCATGGCGCTCCCGAACGCCCGGGTGCTGATCCACCAGCCCTACAGCGAGACCGGCCGCGGCCAGGTGTCCGAC
CTGGAGATCGCCGCGAACGAGATCCTCCGGATGCGTGCCCAGCTGGAAGACCTGCTGGCCAAGCACTCCACCACGCCGAT
CGAGAAGATCCGCGAGGACATCGAGCGCGACAAGATCCTCACGGCCGAGGACGCCCTGTCCTACGGCCTGATCGACCAGA
TCATCTCCACCCGGAAGATGAACAACGCGAGCGTGCGCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(37-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

52.632

84.071

0.442
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50.532

83.186

0.42
  clpP Streptococcus mutans UA159

44.828

89.823

0.403
  clpP Streptococcus thermophilus LMD-9

46.667

86.283

0.403
  clpP Streptococcus thermophilus LMG 18311

46.667

86.283

0.403
  clpP Streptococcus pneumoniae D39

44.898

86.726

0.389
  clpP Streptococcus pneumoniae R6

44.898

86.726

0.389
  clpP Streptococcus pneumoniae TIGR4

44.898

86.726

0.389
  clpP Lactococcus lactis subsp. cremoris KW2

44.898

86.726

0.389
  clpP Streptococcus pneumoniae Rx1

44.898

86.726

0.389
  clpP Streptococcus pyogenes MGAS315

45.128

86.283

0.389
  clpP Streptococcus pyogenes JRS4

45.128

86.283

0.389
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.878

86.726

0.381