Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OHB14_RS40600 Genome accession   NZ_CP109303
Coordinates   8806636..8807316 (+) Length   226 a.a.
NCBI ID   WP_405872766.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01613     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 8801636..8812316
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHB14_RS40570 (OHB14_40535) - 8803308..8803502 (+) 195 WP_016435177.1 hypothetical protein -
  OHB14_RS40575 (OHB14_40540) - 8803492..8803617 (-) 126 WP_406445426.1 hypothetical protein -
  OHB14_RS40590 (OHB14_40555) tig 8804242..8805639 (+) 1398 WP_406445428.1 trigger factor -
  OHB14_RS40595 (OHB14_40560) clpP 8805977..8806585 (+) 609 WP_405877596.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OHB14_RS40600 (OHB14_40565) clpP 8806636..8807316 (+) 681 WP_405872766.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OHB14_RS40605 (OHB14_40570) clpX 8807498..8808787 (+) 1290 WP_405872768.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OHB14_RS40610 (OHB14_40575) - 8808982..8809254 (+) 273 WP_405872770.1 hypothetical protein -
  OHB14_RS40615 (OHB14_40580) - 8809342..8810313 (-) 972 WP_405872772.1 hypothetical protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 24972.35 Da        Isoelectric Point: 4.5652

>NTDB_id=673765 OHB14_RS40600 WP_405872766.1 8806636..8807316(+) (clpP) [Streptomyces sp. NBC_01613]
MNDFPGSGLYDRTSAEYTGPSAESRYVIPRFVERTSQGIREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDP
DRDISVYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAILLAAGTPGKRMALPNARVLIHQPYSETGRGQVSD
LEIAANEILRMRAQLEEMLAKHSTTPIEKIREDIERDKILTAEDALAYGLVDQIISTRKMNNASVR

Nucleotide


Download         Length: 681 bp        

>NTDB_id=673765 OHB14_RS40600 WP_405872766.1 8806636..8807316(+) (clpP) [Streptomyces sp. NBC_01613]
GTGAACGACTTCCCCGGCAGCGGCCTGTACGACCGCACAAGCGCCGAGTACACGGGCCCCTCCGCGGAGTCCCGCTATGT
GATCCCGCGTTTCGTCGAGCGCACCTCGCAGGGCATCCGCGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCGTGA
TCTTCCTCGGCGTCCAGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGACCCC
GACCGGGACATCTCGGTCTACATCAACAGCCCCGGCGGCTCCTTCACCGCGCTGACTGCGATCTACGACACGATGCAGTT
CGTGAAGCCGGACATCCAGACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCGGCCATCCTGCTGGCCGCCGGTACGCCCG
GCAAGCGCATGGCGCTGCCGAACGCCCGCGTGCTGATCCACCAGCCCTACAGCGAGACGGGCCGCGGTCAGGTCTCGGAC
CTCGAGATCGCCGCCAACGAGATCCTCCGGATGCGCGCGCAGCTGGAGGAGATGCTGGCCAAGCACTCCACCACGCCGAT
CGAGAAGATCCGCGAGGACATCGAGCGCGACAAGATCCTCACGGCCGAGGACGCGCTGGCGTACGGACTGGTCGACCAGA
TCATCTCCACCCGGAAGATGAACAACGCGTCCGTCCGCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(37-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

51.579

84.071

0.434
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

48.936

83.186

0.407
  clpP Streptococcus mutans UA159

44.724

88.053

0.394
  clpP Streptococcus thermophilus LMD-9

45.641

86.283

0.394
  clpP Streptococcus thermophilus LMG 18311

45.641

86.283

0.394
  clpP Streptococcus pyogenes JRS4

44.615

86.283

0.385
  clpP Streptococcus pyogenes MGAS315

44.615

86.283

0.385
  clpP Streptococcus pneumoniae TIGR4

43.878

86.726

0.381
  clpP Lactococcus lactis subsp. cremoris KW2

43.878

86.726

0.381
  clpP Streptococcus pneumoniae Rx1

43.878

86.726

0.381
  clpP Streptococcus pneumoniae D39

43.878

86.726

0.381
  clpP Streptococcus pneumoniae R6

43.878

86.726

0.381
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

42.857

86.726

0.372