NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	OHB14_RS40595	Genome accession	NZ_CP109303
Coordinates	8805977..8806585 (+)	Length	202 a.a.
NCBI ID	WP_405877596.1	Uniprot ID	-
Organism	Streptomyces sp. NBC_01613
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 8800977..8811585

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OHB14_RS40560 (OHB14_40525)	-	8801036..8801485 (+)	450	WP_406447417.1	HD domain-containing protein	-
OHB14_RS40565 (OHB14_40530)	-	8801499..8802692 (-)	1194	WP_406445424.1	acyltransferase family protein	-
OHB14_RS40570 (OHB14_40535)	-	8803308..8803502 (+)	195	WP_016435177.1	hypothetical protein	-
OHB14_RS40575 (OHB14_40540)	-	8803492..8803617 (-)	126	WP_406445426.1	hypothetical protein	-
OHB14_RS40590 (OHB14_40555)	tig	8804242..8805639 (+)	1398	WP_406445428.1	trigger factor	-
OHB14_RS40595 (OHB14_40560)	clpP	8805977..8806585 (+)	609	WP_405877596.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OHB14_RS40600 (OHB14_40565)	clpP	8806636..8807316 (+)	681	WP_405872766.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OHB14_RS40605 (OHB14_40570)	clpX	8807498..8808787 (+)	1290	WP_405872768.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
OHB14_RS40610 (OHB14_40575)	-	8808982..8809254 (+)	273	WP_405872770.1	hypothetical protein	-
OHB14_RS40615 (OHB14_40580)	-	8809342..8810313 (-)	972	WP_405872772.1	hypothetical protein	-

Sequence

Protein

Download Length: 202 a.a. Molecular weight: 21261.09 Da Isoelectric Point: 4.6747

                                >NTDB_id=673764 OHB14_RS40595 WP_405877596.1 8805977..8806585(+) (clpP) [Streptomyces sp. NBC_01613]

MPSAAGEPSIGGGLGDQVYNRLLNERIIFLGQPVDDDIANKITAQLLLLAAADPDKDINLYINSPGGSITAGMAIYDTMQ

FIKNDVMTIAMGLAASMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAERLLHTKKRMAELTSQHTGQTV

EQVTRDSDRDRWFDPEEAKAYGLIDDVISTAAGIPGGGGTGA

Nucleotide

Download Length: 609 bp

                                >NTDB_id=673764 OHB14_RS40595 WP_405877596.1 8805977..8806585(+) (clpP) [Streptomyces sp. NBC_01613]

ATGCCCTCCGCCGCCGGCGAGCCTTCCATCGGTGGTGGCCTCGGCGACCAGGTCTACAACCGGCTGCTCAACGAGCGGAT

CATCTTCCTCGGCCAGCCGGTCGACGACGACATCGCGAACAAGATCACCGCACAGCTTCTGCTCCTTGCCGCGGCCGACC

CCGACAAGGACATCAACCTCTACATCAACAGCCCGGGCGGCTCGATCACGGCCGGCATGGCGATCTACGACACCATGCAG

TTCATCAAGAACGACGTGATGACGATCGCTATGGGCCTCGCCGCGTCCATGGGCCAGTTCCTGCTCAGCGCGGGCACCCC

GGGCAAGCGGTTCGCCCTCCCGAACGCCGAGATCCTGATCCACCAGCCCTCCGCCGGCCTGGCCGGTTCGGCCTCGGACA

TCAAGATCCACGCCGAGCGGCTGCTGCACACCAAGAAGCGCATGGCCGAGCTCACGTCCCAGCACACGGGCCAGACCGTC

GAGCAGGTCACCCGTGACTCGGACCGCGACCGCTGGTTCGACCCCGAGGAGGCCAAGGCGTACGGCCTCATCGACGACGT

CATCAGCACAGCTGCCGGCATCCCGGGCGGCGGCGGCACCGGGGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(16-190)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	57.558	85.149	0.49
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	51.351	91.584	0.47
clpP	Lactococcus lactis subsp. cremoris KW2	51.63	91.089	0.47
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	51.087	91.089	0.465
clpP	Streptococcus mutans UA159	54.335	85.644	0.465
clpP	Streptococcus pyogenes MGAS315	52.601	85.644	0.45
clpP	Streptococcus pyogenes JRS4	52.601	85.644	0.45
clpP	Streptococcus thermophilus LMD-9	50.575	86.139	0.436
clpP	Streptococcus thermophilus LMG 18311	50.575	86.139	0.436
clpP	Streptococcus pneumoniae Rx1	50	86.139	0.431
clpP	Streptococcus pneumoniae D39	50	86.139	0.431
clpP	Streptococcus pneumoniae R6	50	86.139	0.431
clpP	Streptococcus pneumoniae TIGR4	50	86.139	0.431

Detailed information NTG0673764