Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OH775_RS34045 Genome accession   NZ_CP109301
Coordinates   7500408..7501088 (+) Length   226 a.a.
NCBI ID   WP_327428702.1    Uniprot ID   A0ABW2VIT8
Organism   Streptomyces sp. NBC_01615     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 7495408..7506088
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OH775_RS34020 (OH775_33960) - 7496758..7497264 (+) 507 WP_406477806.1 hypothetical protein -
  OH775_RS34035 (OH775_33975) tig 7497867..7499267 (+) 1401 WP_406477808.1 trigger factor -
  OH775_RS34040 (OH775_33980) clpP 7499696..7500301 (+) 606 WP_327435020.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OH775_RS34045 (OH775_33985) clpP 7500408..7501088 (+) 681 WP_327428702.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OH775_RS34050 (OH775_33990) clpX 7501249..7502535 (+) 1287 WP_369259233.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OH775_RS34055 (OH775_33995) - 7502730..7503698 (-) 969 WP_406477811.1 hypothetical protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 24997.44 Da        Isoelectric Point: 4.6288

>NTDB_id=673567 OH775_RS34045 WP_327428702.1 7500408..7501088(+) (clpP) [Streptomyces sp. NBC_01615]
MNDFPGSGLYARTQAEYTGPRAESRYVIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDP
DRDISVYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAILLAAGTPGKRMALPNARVLIHQPYSETGRGQVSD
LEIAANEILRMRAQLEDMLAKHSTTPIEKIREDIERDKILTAEDALAYGLIDQIISTRKMNNSTVV

Nucleotide


Download         Length: 681 bp        

>NTDB_id=673567 OH775_RS34045 WP_327428702.1 7500408..7501088(+) (clpP) [Streptomyces sp. NBC_01615]
GTGAACGACTTCCCCGGCAGCGGCCTCTACGCCCGCACGCAGGCCGAGTACACCGGTCCTCGCGCGGAGTCCCGCTACGT
CATCCCGCGCTTCGTCGAGCGCACCTCGCAGGGCGTGCGTGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCGTGA
TCTTCCTCGGCGTGCAGATCGACGACGCGTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGACCCC
GACCGTGACATCTCGGTCTACATCAACAGCCCCGGTGGCTCCTTCACGGCACTCACTGCGATTTACGACACGATGCAGTT
CGTGAAGCCGGACATTCAGACGGTCTGCATGGGCCAGGCCGCCTCGGCTGCCGCGATCCTGCTGGCCGCCGGTACGCCGG
GCAAGCGCATGGCGCTTCCGAACGCCCGCGTGCTGATCCACCAGCCGTACAGCGAGACCGGCCGCGGCCAGGTCTCGGAC
CTCGAAATCGCTGCGAACGAGATCCTCCGGATGCGTGCGCAGCTGGAAGACATGCTGGCCAAGCACTCGACCACGCCGAT
CGAGAAGATCCGCGAGGACATCGAGCGCGACAAGATCCTCACGGCTGAAGACGCGCTGGCGTACGGCCTGATCGACCAGA
TCATCTCCACCCGGAAGATGAACAACTCGACGGTTGTCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(37-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

52.105

84.071

0.438
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50

83.186

0.416
  clpP Streptococcus thermophilus LMD-9

46.154

86.283

0.398
  clpP Streptococcus thermophilus LMG 18311

46.154

86.283

0.398
  clpP Streptococcus mutans UA159

45.226

88.053

0.398
  clpP Lactococcus lactis subsp. cremoris KW2

45.226

88.053

0.398
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

44.221

88.053

0.389
  clpP Streptococcus pyogenes MGAS315

45.128

86.283

0.389
  clpP Streptococcus pyogenes JRS4

45.128

86.283

0.389
  clpP Streptococcus pneumoniae TIGR4

44.388

86.726

0.385
  clpP Streptococcus pneumoniae R6

44.388

86.726

0.385
  clpP Streptococcus pneumoniae Rx1

44.388

86.726

0.385
  clpP Streptococcus pneumoniae D39

44.388

86.726

0.385