Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OH775_RS34040 Genome accession   NZ_CP109301
Coordinates   7499696..7500301 (+) Length   201 a.a.
NCBI ID   WP_327435020.1    Uniprot ID   A0ABW2VLA0
Organism   Streptomyces sp. NBC_01615     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 7494696..7505301
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OH775_RS34020 (OH775_33960) - 7496758..7497264 (+) 507 WP_406477806.1 hypothetical protein -
  OH775_RS34035 (OH775_33975) tig 7497867..7499267 (+) 1401 WP_406477808.1 trigger factor -
  OH775_RS34040 (OH775_33980) clpP 7499696..7500301 (+) 606 WP_327435020.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OH775_RS34045 (OH775_33985) clpP 7500408..7501088 (+) 681 WP_327428702.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OH775_RS34050 (OH775_33990) clpX 7501249..7502535 (+) 1287 WP_369259233.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OH775_RS34055 (OH775_33995) - 7502730..7503698 (-) 969 WP_406477811.1 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21279.26 Da        Isoelectric Point: 4.6747

>NTDB_id=673566 OH775_RS34040 WP_327435020.1 7499696..7500301(+) (clpP) [Streptomyces sp. NBC_01615]
MPTAAGEPIGGGLGDQVYNRLLGERIIFLGQAVDDDIANKITAQLLLLASDPDKDIYLYINSPGGSITAGMAIYDTMQYI
KNDVVTIAMGMAASMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAERLLHTKKRMAELTSFHTGQTVEQ
ITKDSDRDRWFDPIEAKEYGLIDDIMPTAAGMPGGGGTGAA

Nucleotide


Download         Length: 606 bp        

>NTDB_id=673566 OH775_RS34040 WP_327435020.1 7499696..7500301(+) (clpP) [Streptomyces sp. NBC_01615]
ATGCCCACAGCTGCCGGCGAGCCTATCGGTGGTGGTCTCGGTGACCAGGTCTACAACCGGCTGCTCGGCGAGCGAATCAT
CTTCCTCGGCCAGGCGGTAGACGACGACATCGCCAACAAGATCACCGCGCAGCTGCTGCTCCTTGCCTCCGACCCGGACA
AGGACATCTACCTCTACATCAACAGCCCCGGCGGATCGATCACGGCCGGCATGGCGATCTACGACACCATGCAGTACATC
AAGAACGACGTGGTGACCATCGCCATGGGCATGGCGGCCTCGATGGGCCAGTTCCTGCTCAGCGCCGGCACCCCCGGCAA
GCGCTTCGCGCTGCCGAACGCCGAGATCCTGATCCACCAGCCCTCCGCCGGCCTCGCCGGTTCCGCGTCGGACATCAAGA
TCCACGCCGAGCGGCTGCTGCACACCAAGAAGCGCATGGCGGAGCTGACCTCCTTCCACACGGGCCAGACCGTGGAGCAG
ATCACCAAGGACTCCGACCGCGACCGCTGGTTCGACCCGATCGAGGCCAAGGAGTACGGCCTCATCGACGACATCATGCC
CACCGCTGCCGGTATGCCGGGCGGCGGCGGCACCGGGGCGGCGTAA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(15-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

55.08

93.035

0.512
  clpP Lactococcus lactis subsp. cremoris KW2

52.91

94.03

0.498
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

52.381

94.03

0.493
  clpP Streptococcus mutans UA159

52.381

94.03

0.493
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

55.172

86.567

0.478
  clpP Streptococcus pyogenes MGAS315

49.735

94.03

0.468
  clpP Streptococcus pyogenes JRS4

49.735

94.03

0.468
  clpP Streptococcus thermophilus LMG 18311

48.677

94.03

0.458
  clpP Streptococcus thermophilus LMD-9

48.677

94.03

0.458
  clpP Streptococcus pneumoniae Rx1

48.148

94.03

0.453
  clpP Streptococcus pneumoniae D39

48.148

94.03

0.453
  clpP Streptococcus pneumoniae R6

48.148

94.03

0.453
  clpP Streptococcus pneumoniae TIGR4

48.148

94.03

0.453