Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OH768_RS34470 Genome accession   NZ_CP109293
Coordinates   7446073..7446753 (+) Length   226 a.a.
NCBI ID   WP_359612097.1    Uniprot ID   A0ABW6MHX5
Organism   Streptomyces sp. NBC_01622     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 7441073..7451753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OH768_RS34440 (OH768_34385) - 7442446..7442640 (+) 195 WP_406459855.1 hypothetical protein -
  OH768_RS34445 (OH768_34390) - 7442816..7443055 (+) 240 WP_406459856.1 hypothetical protein -
  OH768_RS34460 (OH768_34405) tig 7443688..7445055 (+) 1368 WP_406459857.1 trigger factor -
  OH768_RS34465 (OH768_34410) clpP 7445420..7446022 (+) 603 WP_043676731.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OH768_RS34470 (OH768_34415) clpP 7446073..7446753 (+) 681 WP_359612097.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OH768_RS34475 (OH768_34420) clpX 7446915..7448201 (+) 1287 WP_406459858.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OH768_RS34480 (OH768_34425) - 7448282..7449250 (-) 969 WP_406459859.1 hypothetical protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25032.41 Da        Isoelectric Point: 4.6414

>NTDB_id=673238 OH768_RS34470 WP_359612097.1 7446073..7446753(+) (clpP) [Streptomyces sp. NBC_01622]
MNNFPGNGLYDHARAEYTAPAAESRYVIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDP
DRDISIYINSPGGSFTALTAIYDTMQFVKPDVQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLIHQPYSETGRGQVSD
LEIAANEILRMRAQLEDMLAKHSTTPLEKIREDIERDKILTAEDALSYGLIDQIISTRKMNNADVR

Nucleotide


Download         Length: 681 bp        

>NTDB_id=673238 OH768_RS34470 WP_359612097.1 7446073..7446753(+) (clpP) [Streptomyces sp. NBC_01622]
GTGAACAACTTCCCCGGCAACGGCCTGTACGACCACGCACGCGCCGAATACACGGCTCCCGCCGCCGAGTCCCGTTACGT
GATCCCGCGCTTCGTGGAGCGCACCTCGCAGGGCGTCCGTGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCGTGA
TCTTCCTCGGTGTCCAGATCGACGACGCGTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGACCCC
GACCGCGACATCTCGATCTACATCAACAGCCCCGGCGGCTCCTTCACGGCGCTGACCGCGATCTACGACACGATGCAGTT
CGTGAAGCCGGACGTCCAGACGGTCTGCATGGGCCAGGCGGCGTCCGCCGCCGCCGTCCTGCTGGCCGCCGGTACGCCGG
GCAAGCGCATGGCGCTGCCGAACGCGCGCGTGCTGATCCACCAGCCCTACAGCGAGACGGGCCGGGGCCAGGTCTCCGAC
CTGGAGATCGCGGCCAACGAGATCCTCCGCATGCGTGCCCAGCTGGAGGACATGCTGGCCAAGCACTCGACCACCCCGCT
GGAGAAGATCCGCGAGGACATCGAGCGCGACAAGATCCTCACGGCCGAGGACGCCCTGTCGTACGGCCTGATCGACCAGA
TCATCTCCACCCGGAAGATGAACAACGCCGACGTCCGCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(37-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

53.158

84.071

0.447
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50.532

83.186

0.42
  clpP Streptococcus mutans UA159

44.724

88.053

0.394
  clpP Streptococcus thermophilus LMD-9

45.641

86.283

0.394
  clpP Streptococcus thermophilus LMG 18311

45.641

86.283

0.394
  clpP Streptococcus pneumoniae D39

45.408

86.726

0.394
  clpP Streptococcus pneumoniae R6

45.408

86.726

0.394
  clpP Streptococcus pneumoniae TIGR4

45.408

86.726

0.394
  clpP Streptococcus pneumoniae Rx1

45.408

86.726

0.394
  clpP Lactococcus lactis subsp. cremoris KW2

44.898

86.726

0.389
  clpP Streptococcus pyogenes JRS4

45.128

86.283

0.389
  clpP Streptococcus pyogenes MGAS315

45.128

86.283

0.389
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.878

86.726

0.381