Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OH768_RS34465 Genome accession   NZ_CP109293
Coordinates   7445420..7446022 (+) Length   200 a.a.
NCBI ID   WP_043676731.1    Uniprot ID   A0ABW6MGQ7
Organism   Streptomyces sp. NBC_01622     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 7440420..7451022
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OH768_RS34430 (OH768_34375) - 7440549..7441004 (+) 456 WP_406459853.1 HD domain-containing protein -
  OH768_RS34435 (OH768_34380) - 7441001..7442140 (-) 1140 WP_406459854.1 acyltransferase family protein -
  OH768_RS34440 (OH768_34385) - 7442446..7442640 (+) 195 WP_406459855.1 hypothetical protein -
  OH768_RS34445 (OH768_34390) - 7442816..7443055 (+) 240 WP_406459856.1 hypothetical protein -
  OH768_RS34460 (OH768_34405) tig 7443688..7445055 (+) 1368 WP_406459857.1 trigger factor -
  OH768_RS34465 (OH768_34410) clpP 7445420..7446022 (+) 603 WP_043676731.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OH768_RS34470 (OH768_34415) clpP 7446073..7446753 (+) 681 WP_359612097.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OH768_RS34475 (OH768_34420) clpX 7446915..7448201 (+) 1287 WP_406459858.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OH768_RS34480 (OH768_34425) - 7448282..7449250 (-) 969 WP_406459859.1 hypothetical protein -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 21208.07 Da        Isoelectric Point: 4.5772

>NTDB_id=673237 OH768_RS34465 WP_043676731.1 7445420..7446022(+) (clpP) [Streptomyces sp. NBC_01622]
MPTAAGEPSFGGLGDQVYNRLLGERIIFLGQAVDDDIANKITAQLLLLAADPDKDIYLYINSPGGSITAGMAIYDTMQFI
KNDVVTIAMGLAASMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAERLLHTKKRMAELTSFHTGQTIEQ
ITRDSDRDRWFDADEAKEYGLIDDVIPTAAGMPGGGGTGA

Nucleotide


Download         Length: 603 bp        

>NTDB_id=673237 OH768_RS34465 WP_043676731.1 7445420..7446022(+) (clpP) [Streptomyces sp. NBC_01622]
ATGCCTACAGCCGCCGGCGAGCCCTCTTTCGGTGGCCTCGGCGACCAGGTCTACAACCGACTGCTCGGTGAGCGGATCAT
CTTCCTCGGCCAGGCGGTCGACGACGACATCGCGAACAAGATCACCGCACAGCTCCTCCTCCTTGCCGCCGACCCCGACA
AGGACATCTACCTCTACATCAACAGCCCCGGCGGCTCGATCACGGCCGGCATGGCGATCTACGACACCATGCAGTTCATC
AAGAACGACGTGGTGACCATCGCCATGGGCCTCGCCGCCTCCATGGGCCAGTTCCTCCTCAGCGCGGGCACCCCGGGCAA
GCGCTTCGCCCTCCCGAACGCCGAGATCCTGATCCACCAGCCCTCCGCCGGCCTGGCCGGTTCGGCCTCCGACATCAAGA
TCCACGCGGAGCGGCTGCTGCACACCAAGAAGCGCATGGCCGAGCTGACGTCCTTCCACACCGGCCAGACCATCGAGCAG
ATCACTCGCGACTCTGACCGGGACCGCTGGTTCGACGCCGATGAGGCCAAGGAGTACGGCCTCATCGACGACGTGATCCC
CACGGCCGCCGGTATGCCGGGCGGCGGCGGCACCGGGGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(15-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

56.15

93.5

0.525
  clpP Streptococcus mutans UA159

52.91

94.5

0.5
  clpP Lactococcus lactis subsp. cremoris KW2

52.381

94.5

0.495
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

51.852

94.5

0.49
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

51.579

95

0.49
  clpP Streptococcus pyogenes MGAS315

49.735

94.5

0.47
  clpP Streptococcus pyogenes JRS4

49.735

94.5

0.47
  clpP Streptococcus thermophilus LMG 18311

49.206

94.5

0.465
  clpP Streptococcus thermophilus LMD-9

49.206

94.5

0.465
  clpP Streptococcus pneumoniae Rx1

48.148

94.5

0.455
  clpP Streptococcus pneumoniae D39

48.148

94.5

0.455
  clpP Streptococcus pneumoniae R6

48.148

94.5

0.455
  clpP Streptococcus pneumoniae TIGR4

48.148

94.5

0.455