Detailed information    

insolico Bioinformatically predicted

Overview


Name   comGC   Type   Machinery gene
Locus tag   MUA36_RS07770 Genome accession   NZ_CP094815
Coordinates   1497545..1497862 (+) Length   105 a.a.
NCBI ID   WP_049318779.1    Uniprot ID   -
Organism   Mammaliicoccus sciuri strain IVB6255     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1492545..1502862
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA36_RS07730 (MUA36_07715) - 1492690..1492881 (+) 192 WP_078099923.1 YqgQ family protein -
  MUA36_RS07735 (MUA36_07720) - 1492878..1493849 (+) 972 WP_025904167.1 ROK family glucokinase -
  MUA36_RS07740 (MUA36_07725) - 1493849..1494163 (+) 315 WP_037588286.1 MTH1187 family thiamine-binding protein -
  MUA36_RS07745 (MUA36_07730) - 1494193..1494432 (-) 240 WP_016911885.1 DUF2759 domain-containing protein -
  MUA36_RS07750 (MUA36_07735) - 1494530..1495162 (+) 633 WP_049318777.1 MBL fold metallo-hydrolase -
  MUA36_RS07755 (MUA36_07740) - 1495195..1495443 (-) 249 WP_025904960.1 DUF2626 family protein -
  MUA36_RS07760 (MUA36_07745) comGA 1495597..1496499 (+) 903 WP_164960729.1 competence type IV pilus ATPase ComGA -
  MUA36_RS07765 (MUA36_07750) comGB 1496489..1497418 (+) 930 WP_262636859.1 competence type IV pilus assembly protein ComGB -
  MUA36_RS07770 (MUA36_07755) comGC 1497545..1497862 (+) 318 WP_049318779.1 competence type IV pilus major pilin ComGC Machinery gene
  MUA36_RS07775 (MUA36_07760) - 1497891..1498289 (+) 399 WP_049319406.1 hypothetical protein -
  MUA36_RS07780 (MUA36_07765) - 1498273..1498554 (+) 282 WP_049318780.1 hypothetical protein -
  MUA36_RS07785 (MUA36_07770) - 1498529..1498963 (+) 435 WP_243526090.1 competence type IV pilus minor pilin ComGF -
  MUA36_RS07790 (MUA36_07775) - 1499198..1499686 (+) 489 WP_243526087.1 shikimate kinase -
  MUA36_RS07795 (MUA36_07780) gcvT 1499879..1500967 (+) 1089 WP_049318783.1 glycine cleavage system aminomethyltransferase GcvT -
  MUA36_RS07800 (MUA36_07785) gcvPA 1500979..1502322 (+) 1344 WP_231296574.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence


Protein


Download         Length: 105 a.a.        Molecular weight: 11591.60 Da        Isoelectric Point: 7.8554

>NTDB_id=673167 MUA36_RS07770 WP_049318779.1 1497545..1497862(+) (comGC) [Mammaliicoccus sciuri strain IVB6255]
MKRFNFLSKKEGFTLVEMLIVLLIISILLVIIIPNISKQSETVKSTGCQAQVKMVAGQVEAYTLKHDAKPNSINDLISDG
YINQKQLTCKSGETITLENGEVVAH

Nucleotide


Download         Length: 318 bp        

>NTDB_id=673167 MUA36_RS07770 WP_049318779.1 1497545..1497862(+) (comGC) [Mammaliicoccus sciuri strain IVB6255]
ATGAAAAGATTTAATTTTTTAAGTAAAAAAGAAGGGTTTACATTGGTTGAGATGTTAATTGTTCTTTTAATAATAAGTAT
ATTATTGGTGATCATCATACCAAACATTAGCAAGCAATCAGAGACTGTAAAAAGTACTGGCTGCCAAGCTCAAGTGAAAA
TGGTTGCTGGTCAAGTAGAAGCTTATACATTGAAACACGATGCTAAACCAAATTCTATAAATGATTTAATAAGTGATGGC
TATATTAACCAAAAGCAACTGACTTGTAAATCAGGAGAAACAATTACGCTAGAAAACGGTGAAGTTGTTGCACATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus N315

64.706

97.143

0.629

  comGC Staphylococcus aureus MW2

64.706

97.143

0.629

  comGC Bacillus subtilis subsp. subtilis str. 168

47.312

88.571

0.419

  comYC Streptococcus mutans UA159

47.126

82.857

0.39

  comYC Streptococcus mutans UA140

47.126

82.857

0.39

  comGC/cglC Streptococcus mitis SK321

45.977

82.857

0.381

  comGC/cglC Streptococcus mitis NCTC 12261

45.977

82.857

0.381

  comGC/cglC Streptococcus pneumoniae D39

44.828

82.857

0.371

  comGC/cglC Streptococcus pneumoniae Rx1

44.828

82.857

0.371

  comGC/cglC Streptococcus pneumoniae TIGR4

44.828

82.857

0.371

  comGC/cglC Streptococcus pneumoniae R6

44.828

82.857

0.371

  comGC Lactococcus lactis subsp. cremoris KW2

46.914

77.143

0.362

  comYC Streptococcus suis isolate S10

48.718

74.286

0.362