Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OHB56_RS15100 Genome accession   NZ_CP109277
Coordinates   3219794..3220474 (-) Length   226 a.a.
NCBI ID   WP_055593250.1    Uniprot ID   A0ABW1E8P1
Organism   Streptomyces sp. NBC_01635     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3214794..3225474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHB56_RS15090 (OHB56_15035) - 3217289..3218221 (+) 933 WP_326752746.1 hypothetical protein -
  OHB56_RS15095 (OHB56_15040) clpX 3218318..3219604 (-) 1287 WP_055570715.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OHB56_RS15100 (OHB56_15045) clpP 3219794..3220474 (-) 681 WP_055593250.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OHB56_RS15105 (OHB56_15050) clpP 3220589..3221197 (-) 609 WP_055625632.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OHB56_RS15110 (OHB56_15055) tig 3221591..3223027 (-) 1437 WP_326752747.1 trigger factor -
  OHB56_RS15125 (OHB56_15070) - 3223569..3223763 (-) 195 WP_055593252.1 hypothetical protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25060.41 Da        Isoelectric Point: 4.5730

>NTDB_id=673100 OHB56_RS15100 WP_055593250.1 3219794..3220474(-) (clpP) [Streptomyces sp. NBC_01635]
MNDFPGSGLYDRTRAEYTGPAAESRYVIPRFVERTSQGIREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDP
DRDISVYINSPGGSFTALTAIYDTMQYVKPDVQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLIHQPYSETGRGQVSD
LEIAANEILRMRAQLEDMLAKHSTTPVEKIREDIERDKILTAEDALSYGLIDQIITTRKMDNSSLR

Nucleotide


Download         Length: 681 bp        

>NTDB_id=673100 OHB56_RS15100 WP_055593250.1 3219794..3220474(-) (clpP) [Streptomyces sp. NBC_01635]
GTGAACGACTTCCCCGGCAGCGGCCTGTACGACCGCACCCGTGCCGAGTACACCGGCCCCGCGGCCGAGTCCCGCTACGT
CATCCCGCGCTTCGTCGAGCGCACCTCCCAGGGCATCCGCGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCGTGA
TCTTCCTCGGCGTCCAGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGACCCC
GACCGGGACATCTCGGTCTACATCAACAGCCCCGGCGGCTCCTTCACCGCGCTCACCGCGATCTACGACACCATGCAGTA
CGTGAAGCCCGACGTGCAGACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCCGCCGTCCTGCTCGCCGCCGGTACGCCCG
GCAAGCGCATGGCGCTGCCGAACGCGCGGGTGCTGATCCACCAGCCGTACAGCGAGACCGGCCGCGGCCAGGTGTCCGAC
CTGGAGATCGCCGCCAACGAGATCCTCCGCATGCGTGCGCAGCTCGAGGACATGCTGGCCAAGCACTCCACCACGCCGGT
CGAGAAGATCCGCGAGGACATCGAGCGCGACAAGATCCTGACGGCCGAGGACGCGCTGAGCTACGGCCTGATCGACCAGA
TCATCACCACCCGGAAGATGGACAACTCCAGCCTGCGCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(37-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

52.632

84.071

0.442
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

51.596

83.186

0.429
  clpP Streptococcus mutans UA159

44.39

90.708

0.403
  clpP Streptococcus pyogenes JRS4

44.776

88.938

0.398
  clpP Streptococcus pyogenes MGAS315

44.776

88.938

0.398
  clpP Lactococcus lactis subsp. cremoris KW2

44.554

89.381

0.398
  clpP Streptococcus thermophilus LMG 18311

45.641

86.283

0.394
  clpP Streptococcus thermophilus LMD-9

45.641

86.283

0.394
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.564

89.381

0.389
  clpP Streptococcus pneumoniae Rx1

44.388

86.726

0.385
  clpP Streptococcus pneumoniae D39

44.388

86.726

0.385
  clpP Streptococcus pneumoniae R6

44.388

86.726

0.385
  clpP Streptococcus pneumoniae TIGR4

44.388

86.726

0.385