Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OHB56_RS15105 Genome accession   NZ_CP109277
Coordinates   3220589..3221197 (-) Length   202 a.a.
NCBI ID   WP_055625632.1    Uniprot ID   A0ABZ1GYS3
Organism   Streptomyces sp. NBC_01635     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3215589..3226197
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHB56_RS15090 (OHB56_15035) - 3217289..3218221 (+) 933 WP_326752746.1 hypothetical protein -
  OHB56_RS15095 (OHB56_15040) clpX 3218318..3219604 (-) 1287 WP_055570715.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OHB56_RS15100 (OHB56_15045) clpP 3219794..3220474 (-) 681 WP_055593250.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OHB56_RS15105 (OHB56_15050) clpP 3220589..3221197 (-) 609 WP_055625632.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OHB56_RS15110 (OHB56_15055) tig 3221591..3223027 (-) 1437 WP_326752747.1 trigger factor -
  OHB56_RS15125 (OHB56_15070) - 3223569..3223763 (-) 195 WP_055593252.1 hypothetical protein -
  OHB56_RS15130 (OHB56_15075) - 3224430..3225653 (+) 1224 WP_406353791.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 21367.23 Da        Isoelectric Point: 4.6747

>NTDB_id=673101 OHB56_RS15105 WP_055625632.1 3220589..3221197(-) (clpP) [Streptomyces sp. NBC_01635]
MPSAAGEPSIGGGLGDQVYNRLLGERIIFLGQPVDDDIANKITAQLLLLASDPDKDIYLYINSPGGSITAGMAIYDTMQY
IKNDVVTIAMGLAASMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAERLLHTKKRMAELTSQHTGQTIE
QITRDSDRDRWFDAFEAKEYGLIDDVMTTAAGMPGGGGTGAG

Nucleotide


Download         Length: 609 bp        

>NTDB_id=673101 OHB56_RS15105 WP_055625632.1 3220589..3221197(-) (clpP) [Streptomyces sp. NBC_01635]
ATGCCTTCAGCCGCCGGCGAGCCTTCCATCGGTGGTGGCCTCGGCGACCAGGTCTACAACCGGCTGCTCGGCGAGCGGAT
CATCTTCCTCGGCCAGCCGGTCGACGACGACATCGCCAACAAGATCACCGCACAGCTGCTGCTCCTTGCCTCCGACCCGG
ACAAGGACATCTACCTCTACATCAACAGCCCCGGCGGCTCGATCACCGCCGGCATGGCGATCTACGACACCATGCAGTAC
ATCAAGAACGACGTGGTGACCATCGCCATGGGCCTCGCGGCCTCGATGGGTCAGTTCCTGCTCAGCGCGGGCACGCCCGG
CAAGCGCTTCGCGCTGCCGAACGCGGAGATCCTGATCCACCAGCCCTCCGCCGGCCTGGCCGGCTCGGCCTCGGACATCA
AGATCCACGCCGAGCGGCTGCTGCACACCAAGAAGCGCATGGCCGAGCTCACCTCCCAGCACACGGGCCAGACGATCGAG
CAGATCACCCGCGACTCGGACCGCGACCGCTGGTTCGACGCCTTCGAGGCCAAGGAGTACGGCCTCATCGACGACGTCAT
GACCACGGCCGCGGGCATGCCGGGCGGCGGCGGCACCGGGGCGGGCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(16-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

58.14

85.149

0.495
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

54.396

90.099

0.49
  clpP Lactococcus lactis subsp. cremoris KW2

53.804

91.089

0.49
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

53.261

91.089

0.485
  clpP Streptococcus mutans UA159

56.647

85.644

0.485
  clpP Streptococcus pyogenes MGAS315

53.757

85.644

0.46
  clpP Streptococcus pyogenes JRS4

53.757

85.644

0.46
  clpP Streptococcus thermophilus LMG 18311

52.571

86.634

0.455
  clpP Streptococcus thermophilus LMD-9

52.571

86.634

0.455
  clpP Streptococcus pneumoniae Rx1

51.445

85.644

0.441
  clpP Streptococcus pneumoniae D39

51.445

85.644

0.441
  clpP Streptococcus pneumoniae R6

51.445

85.644

0.441
  clpP Streptococcus pneumoniae TIGR4

51.445

85.644

0.441