Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OIE74_RS26120 Genome accession   NZ_CP109181
Coordinates   5921475..5922158 (+) Length   227 a.a.
NCBI ID   WP_329387676.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01716     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 5916475..5927158
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIE74_RS26090 (OIE74_26100) - 5916658..5917821 (-) 1164 WP_329387672.1 acyltransferase family protein -
  OIE74_RS26095 (OIE74_26105) - 5918301..5918495 (+) 195 WP_189107123.1 hypothetical protein -
  OIE74_RS26110 (OIE74_26120) tig 5919101..5920537 (+) 1437 WP_329387674.1 trigger factor -
  OIE74_RS26115 (OIE74_26125) clpP 5920816..5921421 (+) 606 WP_031231653.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OIE74_RS26120 (OIE74_26130) clpP 5921475..5922158 (+) 684 WP_329387676.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OIE74_RS26125 (OIE74_26135) clpX 5922313..5923605 (+) 1293 WP_078077342.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OIE74_RS26130 (OIE74_26140) - 5923696..5924646 (-) 951 WP_329387678.1 hypothetical protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 24706.09 Da        Isoelectric Point: 4.6747

>NTDB_id=672239 OIE74_RS26120 WP_329387676.1 5921475..5922158(+) (clpP) [Streptomyces sp. NBC_01716]
MVNTHMNNFPGASASGLYTGPQVDNRYVIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMD
PDRDISIYINSPGGSMTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTAGKRLALPNARVLIHQPSSQTGREQLS
DLEIAANEILRMRAQLEDMLAKHSTTPIEKVRDDIERDKILTAEDALAYGLVDQIVSTRKTTAAAAA

Nucleotide


Download         Length: 684 bp        

>NTDB_id=672239 OIE74_RS26120 WP_329387676.1 5921475..5922158(+) (clpP) [Streptomyces sp. NBC_01716]
ATGGTGAACACCCACATGAACAACTTTCCCGGCGCCTCCGCGAGCGGCCTCTACACCGGCCCCCAGGTGGACAACCGCTA
TGTCATCCCGCGCTTCGTGGAGCGCACCTCGCAGGGCGTACGCGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCG
TGATCTTCCTCGGTGTCCAGATCGACGACGCGTCGGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCCATGGAC
CCCGACCGTGACATCTCGATCTACATCAACAGCCCCGGCGGCTCCATGACGGCCCTCACGGCCATCTACGACACGATGCA
GTTCGTGAAGCCGGACATCCAGACGGTCTGCATGGGCCAGGCCGCCTCCGCGGCGGCGGTTTTGCTCGCGGCCGGCACGG
CGGGCAAGCGCCTCGCCCTGCCGAACGCGCGCGTCCTGATCCACCAGCCGTCCAGCCAGACCGGCCGCGAGCAGCTCTCC
GACCTGGAGATCGCGGCCAACGAGATCCTGCGCATGCGCGCGCAGCTCGAGGACATGCTCGCCAAGCACTCCACGACGCC
GATCGAGAAGGTCCGCGACGACATCGAGCGGGACAAGATCCTGACCGCCGAGGACGCTCTGGCGTACGGTCTGGTCGACC
AGATCGTCTCGACCCGTAAGACCACGGCGGCGGCAGCGGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(38-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

50.526

83.7

0.423
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

48.404

82.819

0.401
  clpP Streptococcus thermophilus LMG 18311

45.876

85.463

0.392
  clpP Streptococcus thermophilus LMD-9

45.876

85.463

0.392
  clpP Streptococcus pyogenes MGAS315

44.845

85.463

0.383
  clpP Streptococcus pyogenes JRS4

44.845

85.463

0.383
  clpP Streptococcus pneumoniae R6

45.312

84.581

0.383
  clpP Streptococcus pneumoniae Rx1

45.312

84.581

0.383
  clpP Streptococcus pneumoniae D39

45.312

84.581

0.383
  clpP Streptococcus pneumoniae TIGR4

45.312

84.581

0.383
  clpP Streptococcus mutans UA159

45.263

83.7

0.379
  clpP Lactococcus lactis subsp. cremoris KW2

43.455

84.141

0.366
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

42.932

84.141

0.361