Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OIE74_RS26115 Genome accession   NZ_CP109181
Coordinates   5920816..5921421 (+) Length   201 a.a.
NCBI ID   WP_031231653.1    Uniprot ID   A0ABZ2AFN1
Organism   Streptomyces sp. NBC_01716     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 5915816..5926421
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIE74_RS26090 (OIE74_26100) - 5916658..5917821 (-) 1164 WP_329387672.1 acyltransferase family protein -
  OIE74_RS26095 (OIE74_26105) - 5918301..5918495 (+) 195 WP_189107123.1 hypothetical protein -
  OIE74_RS26110 (OIE74_26120) tig 5919101..5920537 (+) 1437 WP_329387674.1 trigger factor -
  OIE74_RS26115 (OIE74_26125) clpP 5920816..5921421 (+) 606 WP_031231653.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OIE74_RS26120 (OIE74_26130) clpP 5921475..5922158 (+) 684 WP_329387676.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OIE74_RS26125 (OIE74_26135) clpX 5922313..5923605 (+) 1293 WP_078077342.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OIE74_RS26130 (OIE74_26140) - 5923696..5924646 (-) 951 WP_329387678.1 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21126.92 Da        Isoelectric Point: 4.3926

>NTDB_id=672238 OIE74_RS26115 WP_031231653.1 5920816..5921421(+) (clpP) [Streptomyces sp. NBC_01716]
MPYAAGEPSLGGGLGDQVYSRLLGERIIFLGQQVDDDIANKITAQLLLLAAEPEKDIYLYINSPGGSVTAGMAVYDTMQY
IPNDVVTIGMGMAASMGQFLLTGGTAGKRFALPNTDILMHQGSAGLGGTASDIKIQAEQLLRTKKRMAEITARHTGQTEE
TIIRDGDRDRWFTAEEAVSYGIIDEIISAASGVPGGGGTGA

Nucleotide


Download         Length: 606 bp        

>NTDB_id=672238 OIE74_RS26115 WP_031231653.1 5920816..5921421(+) (clpP) [Streptomyces sp. NBC_01716]
ATGCCTTACGCCGCCGGTGAGCCGTCCCTCGGTGGTGGCCTCGGCGACCAGGTCTACAGCCGACTGCTCGGTGAGCGGAT
CATCTTCCTCGGCCAGCAGGTCGACGACGACATCGCCAACAAGATCACCGCGCAGCTCCTTCTCCTCGCGGCCGAGCCCG
AGAAGGACATCTACCTCTACATCAACAGCCCCGGTGGTTCCGTCACGGCGGGCATGGCGGTCTACGACACCATGCAGTAC
ATCCCGAACGACGTGGTGACCATCGGCATGGGCATGGCGGCCTCCATGGGCCAGTTCCTGCTGACCGGCGGCACCGCCGG
CAAGCGCTTCGCGCTGCCCAACACCGACATCCTCATGCACCAGGGCTCCGCGGGCCTCGGCGGCACCGCCTCCGACATCA
AGATCCAGGCCGAGCAGCTGCTCCGTACGAAGAAGCGCATGGCCGAGATCACCGCCCGTCACACGGGCCAGACCGAAGAG
ACCATCATCCGCGACGGTGACCGCGACCGCTGGTTCACCGCCGAGGAGGCCGTGTCCTACGGCATCATCGACGAGATCAT
CTCCGCTGCTTCGGGTGTTCCGGGCGGCGGCGGCACCGGCGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(16-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Lactococcus lactis subsp. cremoris KW2

51.596

93.532

0.483
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50.262

95.025

0.478
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

51.064

93.532

0.478
  clpP Bacillus subtilis subsp. subtilis str. 168

55.814

85.572

0.478
  clpP Streptococcus mutans UA159

53.179

86.07

0.458
  clpP Streptococcus pyogenes MGAS315

52.023

86.07

0.448
  clpP Streptococcus pyogenes JRS4

52.023

86.07

0.448
  clpP Streptococcus pneumoniae Rx1

49.718

88.06

0.438
  clpP Streptococcus pneumoniae D39

49.718

88.06

0.438
  clpP Streptococcus pneumoniae R6

49.718

88.06

0.438
  clpP Streptococcus pneumoniae TIGR4

49.718

88.06

0.438
  clpP Streptococcus thermophilus LMG 18311

50.575

86.567

0.438
  clpP Streptococcus thermophilus LMD-9

50.575

86.567

0.438