Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | SCL_RS02765 | Genome accession | NZ_AP014879 |
| Coordinates | 554689..555915 (-) | Length | 408 a.a. |
| NCBI ID | WP_096359787.1 | Uniprot ID | A0A1B4XDK5 |
| Organism | Sulfuricaulis limicola strain HA5 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 549689..560915
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SCL_RS02750 (SCL_0561) | argJ | 551783..553003 (+) | 1221 | WP_096359781.1 | bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ | - |
| SCL_RS02755 (SCL_0562) | coaE | 553134..553742 (-) | 609 | WP_096359783.1 | dephospho-CoA kinase | - |
| SCL_RS02760 (SCL_0563) | pilD | 553753..554637 (-) | 885 | WP_096359785.1 | prepilin peptidase | Machinery gene |
| SCL_RS02765 (SCL_0564) | pilC | 554689..555915 (-) | 1227 | WP_096359787.1 | type II secretion system F family protein | Machinery gene |
| SCL_RS02770 (SCL_0565) | pilB | 555919..557640 (-) | 1722 | WP_172425894.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| SCL_RS02775 (SCL_0566) | - | 558098..558520 (+) | 423 | WP_096359789.1 | rubrerythrin family protein | - |
| SCL_RS02780 (SCL_0567) | - | 558658..560004 (+) | 1347 | WP_096359791.1 | heterodisulfide reductase-related iron-sulfur binding cluster | - |
| SCL_RS02785 (SCL_0568) | - | 560039..560644 (+) | 606 | WP_420823634.1 | DUF3501 family protein | - |
Sequence
Protein
Download Length: 408 a.a. Molecular weight: 44137.13 Da Isoelectric Point: 9.6634
>NTDB_id=67212 SCL_RS02765 WP_096359787.1 554689..555915(-) (pilC) [Sulfuricaulis limicola strain HA5]
MAEAAIKKPKFDAFTWEGVDKQGKKVKGIMEAASVAFVNATLRRQGINPVKVAKQRKAAFKFKKKITTKDIAVFTRQLAT
MLTSGIPIAQSFDIVGKGHENPSMQEIIMSIKHDVESGTALTQALGKHPLYFDALYCNLVQAGEQAGILDGILDKVATYK
EKIEAIKGKIKSALFYPTAVIVVAFIITAVLLVFVIPQFESLFAGFGADLPAMTKMVINLSKGFQEWWWAIIGTIVGAVV
FLSYSYKRSEKMQHSMDRILLKAPVIGEIVKKATIARFARTLATMFAAGVPLVEALDSVAGAAGNRVYYEGTMAIKSDVS
TGMQLQASMNATGLFPNMVVQMVAIGEESGELDKMLSKVADFYEAEVDDAVAGLSSLLEPIIMAFLGIVIGGLVVAMYLP
IFKLAATV
MAEAAIKKPKFDAFTWEGVDKQGKKVKGIMEAASVAFVNATLRRQGINPVKVAKQRKAAFKFKKKITTKDIAVFTRQLAT
MLTSGIPIAQSFDIVGKGHENPSMQEIIMSIKHDVESGTALTQALGKHPLYFDALYCNLVQAGEQAGILDGILDKVATYK
EKIEAIKGKIKSALFYPTAVIVVAFIITAVLLVFVIPQFESLFAGFGADLPAMTKMVINLSKGFQEWWWAIIGTIVGAVV
FLSYSYKRSEKMQHSMDRILLKAPVIGEIVKKATIARFARTLATMFAAGVPLVEALDSVAGAAGNRVYYEGTMAIKSDVS
TGMQLQASMNATGLFPNMVVQMVAIGEESGELDKMLSKVADFYEAEVDDAVAGLSSLLEPIIMAFLGIVIGGLVVAMYLP
IFKLAATV
Nucleotide
Download Length: 1227 bp
>NTDB_id=67212 SCL_RS02765 WP_096359787.1 554689..555915(-) (pilC) [Sulfuricaulis limicola strain HA5]
ATGGCAGAAGCGGCGATAAAGAAACCGAAGTTCGATGCTTTCACGTGGGAAGGCGTCGATAAACAGGGAAAGAAGGTCAA
GGGCATCATGGAAGCGGCCAGCGTCGCCTTCGTGAATGCCACGCTGCGCCGCCAGGGCATCAACCCCGTCAAGGTAGCCA
AGCAACGCAAGGCGGCCTTCAAGTTCAAGAAAAAGATCACCACCAAGGATATCGCCGTCTTTACCCGCCAGCTCGCGACC
ATGCTGACCTCGGGCATCCCCATTGCCCAGTCTTTCGATATCGTCGGCAAAGGACATGAAAACCCGTCCATGCAGGAAAT
CATCATGTCCATCAAGCATGACGTGGAGTCGGGAACCGCCCTGACCCAGGCGCTCGGCAAACACCCGCTCTATTTCGATG
CCCTGTACTGCAATCTGGTACAGGCCGGCGAGCAGGCCGGTATTCTGGACGGCATCCTGGACAAGGTTGCCACCTACAAG
GAAAAGATCGAGGCCATCAAAGGCAAGATCAAATCCGCCCTGTTCTATCCGACGGCGGTCATCGTGGTAGCATTCATCAT
CACCGCCGTGCTGCTGGTGTTCGTGATCCCGCAGTTCGAGAGTCTGTTCGCCGGTTTCGGCGCCGACCTGCCGGCCATGA
CCAAAATGGTCATCAATCTGTCAAAAGGATTCCAGGAATGGTGGTGGGCGATCATCGGCACCATTGTCGGAGCTGTGGTG
TTCCTGAGCTACTCCTACAAGCGCTCCGAAAAAATGCAACATTCGATGGATCGGATCTTGCTCAAAGCCCCGGTGATCGG
CGAGATCGTCAAAAAGGCTACGATCGCCCGTTTCGCGCGTACGCTGGCGACCATGTTCGCCGCCGGTGTACCGCTGGTGG
AGGCGCTGGATTCCGTCGCGGGCGCCGCGGGGAACCGCGTCTACTACGAAGGCACGATGGCCATCAAGTCCGACGTCAGC
ACCGGCATGCAATTGCAGGCCTCAATGAATGCCACCGGGCTGTTCCCCAACATGGTGGTGCAGATGGTCGCGATCGGCGA
GGAGTCGGGCGAGCTCGATAAGATGCTGAGCAAGGTCGCCGATTTCTACGAGGCGGAAGTGGATGATGCCGTGGCGGGCC
TCTCCAGCCTGCTCGAACCGATCATCATGGCCTTTCTCGGCATCGTCATCGGCGGTCTTGTCGTCGCCATGTACCTGCCG
ATCTTCAAGCTTGCGGCCACCGTTTAA
ATGGCAGAAGCGGCGATAAAGAAACCGAAGTTCGATGCTTTCACGTGGGAAGGCGTCGATAAACAGGGAAAGAAGGTCAA
GGGCATCATGGAAGCGGCCAGCGTCGCCTTCGTGAATGCCACGCTGCGCCGCCAGGGCATCAACCCCGTCAAGGTAGCCA
AGCAACGCAAGGCGGCCTTCAAGTTCAAGAAAAAGATCACCACCAAGGATATCGCCGTCTTTACCCGCCAGCTCGCGACC
ATGCTGACCTCGGGCATCCCCATTGCCCAGTCTTTCGATATCGTCGGCAAAGGACATGAAAACCCGTCCATGCAGGAAAT
CATCATGTCCATCAAGCATGACGTGGAGTCGGGAACCGCCCTGACCCAGGCGCTCGGCAAACACCCGCTCTATTTCGATG
CCCTGTACTGCAATCTGGTACAGGCCGGCGAGCAGGCCGGTATTCTGGACGGCATCCTGGACAAGGTTGCCACCTACAAG
GAAAAGATCGAGGCCATCAAAGGCAAGATCAAATCCGCCCTGTTCTATCCGACGGCGGTCATCGTGGTAGCATTCATCAT
CACCGCCGTGCTGCTGGTGTTCGTGATCCCGCAGTTCGAGAGTCTGTTCGCCGGTTTCGGCGCCGACCTGCCGGCCATGA
CCAAAATGGTCATCAATCTGTCAAAAGGATTCCAGGAATGGTGGTGGGCGATCATCGGCACCATTGTCGGAGCTGTGGTG
TTCCTGAGCTACTCCTACAAGCGCTCCGAAAAAATGCAACATTCGATGGATCGGATCTTGCTCAAAGCCCCGGTGATCGG
CGAGATCGTCAAAAAGGCTACGATCGCCCGTTTCGCGCGTACGCTGGCGACCATGTTCGCCGCCGGTGTACCGCTGGTGG
AGGCGCTGGATTCCGTCGCGGGCGCCGCGGGGAACCGCGTCTACTACGAAGGCACGATGGCCATCAAGTCCGACGTCAGC
ACCGGCATGCAATTGCAGGCCTCAATGAATGCCACCGGGCTGTTCCCCAACATGGTGGTGCAGATGGTCGCGATCGGCGA
GGAGTCGGGCGAGCTCGATAAGATGCTGAGCAAGGTCGCCGATTTCTACGAGGCGGAAGTGGATGATGCCGTGGCGGGCC
TCTCCAGCCTGCTCGAACCGATCATCATGGCCTTTCTCGGCATCGTCATCGGCGGTCTTGTCGTCGCCATGTACCTGCCG
ATCTTCAAGCTTGCGGCCACCGTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Legionella pneumophila strain ERS1305867 |
59.601 |
98.284 |
0.586 |
| pilC | Pseudomonas stutzeri DSM 10701 |
56.618 |
100 |
0.566 |
| pilC | Acinetobacter baumannii D1279779 |
51.843 |
99.755 |
0.517 |
| pilC | Acinetobacter baylyi ADP1 |
50.614 |
99.755 |
0.505 |
| pilG | Neisseria meningitidis 44/76-A |
48.737 |
97.059 |
0.473 |
| pilG | Neisseria gonorrhoeae MS11 |
48.485 |
97.059 |
0.471 |
| pilC | Vibrio cholerae strain A1552 |
42.929 |
97.059 |
0.417 |
| pilC | Vibrio campbellii strain DS40M4 |
41.584 |
99.02 |
0.412 |
| pilC | Thermus thermophilus HB27 |
38.462 |
98.775 |
0.38 |