Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG966_RS13920 Genome accession   NZ_CP109137
Coordinates   3094184..3094789 (-) Length   201 a.a.
NCBI ID   WP_326655196.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01750     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 3089184..3099789
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG966_RS13905 (OG966_13935) - 3090937..3091938 (+) 1002 WP_326649909.1 hypothetical protein -
  OG966_RS13910 (OG966_13940) clpX 3092014..3093297 (-) 1284 WP_326649910.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG966_RS13915 (OG966_13945) clpP 3093443..3094126 (-) 684 WP_326649911.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG966_RS13920 (OG966_13950) clpP 3094184..3094789 (-) 606 WP_326655196.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG966_RS13925 (OG966_13955) tig 3095030..3096424 (-) 1395 WP_326649913.1 trigger factor -
  OG966_RS13940 (OG966_13970) - 3097120..3097614 (-) 495 WP_326649914.1 RICIN domain-containing protein -
  OG966_RS13945 (OG966_13975) - 3098022..3098216 (-) 195 WP_215097656.1 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21183.02 Da        Isoelectric Point: 4.4746

>NTDB_id=671560 OG966_RS13920 WP_326655196.1 3094184..3094789(-) (clpP) [Streptomyces sp. NBC_01750]
MPNAAGEPSIGGGLGDHVYNRLLGERIIFLGQQVDDDIANKITAQMLLLAAEPDKDIYLYINSPGGSVTAGMAIYDTMQY
IPNDVVTIGMGMAASMGQFLLTGGAAGKRFALPNTDILMHQGSAGLGGTASDIKIQAEYLLRTKKRMAEITALHSGQTVE
TIIRDGDRDRWYTAEEAREYGLIDEIMASASGVPGGGGTGA

Nucleotide


Download         Length: 606 bp        

>NTDB_id=671560 OG966_RS13920 WP_326655196.1 3094184..3094789(-) (clpP) [Streptomyces sp. NBC_01750]
ATGCCTAACGCCGCGGGTGAGCCGTCCATCGGTGGTGGCCTCGGCGACCATGTCTACAACCGGCTGCTCGGTGAGCGCAT
CATCTTCCTCGGCCAGCAGGTCGACGACGACATCGCCAACAAGATCACGGCGCAGATGCTGCTCCTTGCCGCCGAACCGG
ACAAGGACATCTACCTCTACATCAACAGCCCCGGCGGCTCGGTGACGGCAGGCATGGCGATCTACGACACCATGCAGTAC
ATCCCGAACGACGTCGTCACGATCGGTATGGGCATGGCGGCCTCGATGGGCCAGTTCCTGCTGACCGGCGGCGCCGCGGG
CAAGCGCTTCGCGCTCCCCAACACCGACATCCTCATGCACCAGGGATCGGCCGGCCTCGGCGGCACCGCCTCCGACATCA
AGATCCAGGCCGAGTACCTGCTCCGCACGAAGAAGCGCATGGCGGAGATCACCGCACTCCACTCCGGTCAGACCGTCGAG
ACGATCATCCGCGACGGTGACCGCGACCGCTGGTACACCGCTGAAGAGGCCAGGGAGTACGGCCTCATCGACGAGATCAT
GGCCTCCGCATCGGGCGTTCCGGGTGGCGGCGGCACCGGCGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(17-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Lactococcus lactis subsp. cremoris KW2

51.596

93.532

0.483
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

51.064

93.532

0.478
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

51.892

92.04

0.478
  clpP Bacillus subtilis subsp. subtilis str. 168

55.556

85.075

0.473
  clpP Streptococcus mutans UA159

53.757

86.07

0.463
  clpP Streptococcus pneumoniae TIGR4

51.977

88.06

0.458
  clpP Streptococcus pneumoniae Rx1

51.977

88.06

0.458
  clpP Streptococcus pneumoniae D39

51.977

88.06

0.458
  clpP Streptococcus pneumoniae R6

51.977

88.06

0.458
  clpP Streptococcus pyogenes JRS4

51.445

86.07

0.443
  clpP Streptococcus pyogenes MGAS315

51.445

86.07

0.443
  clpP Streptococcus thermophilus LMG 18311

50.857

87.065

0.443
  clpP Streptococcus thermophilus LMD-9

50.857

87.065

0.443