Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   MUA22_RS04500 Genome accession   NZ_CP094734
Coordinates   996948..997577 (+) Length   209 a.a.
NCBI ID   WP_014613482.1    Uniprot ID   -
Organism   Staphylococcus delphini strain IVB6245     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 991948..1002577
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA22_RS04470 (MUA22_04470) - 991980..992705 (+) 726 WP_019166458.1 type 1 glutamine amidotransferase -
  MUA22_RS04475 (MUA22_04475) - 992861..993859 (-) 999 WP_019166459.1 aromatic acid exporter family protein -
  MUA22_RS04480 (MUA22_04480) map 993956..994717 (+) 762 WP_262613444.1 type I methionyl aminopeptidase -
  MUA22_RS04485 (MUA22_04485) - 994815..995204 (+) 390 WP_262613446.1 hypothetical protein -
  MUA22_RS04490 (MUA22_04490) liaF 995217..995918 (+) 702 WP_096557032.1 cell wall-active antibiotics response protein LiaF -
  MUA22_RS04495 (MUA22_04495) vraS 995915..996958 (+) 1044 WP_019166463.1 sensor histidine kinase Regulator
  MUA22_RS04500 (MUA22_04500) vraR 996948..997577 (+) 630 WP_014613482.1 response regulator transcription factor Regulator
  MUA22_RS04505 (MUA22_04505) - 997731..998312 (-) 582 WP_019166464.1 carbonic anhydrase -
  MUA22_RS04510 (MUA22_04510) - 998345..999691 (-) 1347 WP_262613447.1 YihY/virulence factor BrkB family protein -
  MUA22_RS04515 (MUA22_04515) - 999907..1000194 (-) 288 WP_014613485.1 YtxH domain-containing protein -
  MUA22_RS04520 (MUA22_04520) - 1000202..1000660 (-) 459 WP_262613448.1 low molecular weight protein-tyrosine-phosphatase -
  MUA22_RS04525 (MUA22_04525) - 1000794..1000997 (+) 204 WP_019166467.1 DUF1128 family protein -
  MUA22_RS04530 (MUA22_04530) - 1001019..1002251 (+) 1233 WP_262613449.1 aminopeptidase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 23484.17 Da        Isoelectric Point: 5.1671

>NTDB_id=671559 MUA22_RS04500 WP_014613482.1 996948..997577(+) (vraR) [Staphylococcus delphini strain IVB6245]
MTIKVLFVDDHEMVRIGISSYLSTQPDIEVVGEGASGKEAIAKAHELKPDLILMDLVMTDMDGVEATMQIKKDLPHIKVV
MLTSYIEDKEVYRALDAGVDSYILKTTSANDIAEAVRKTSRGESVFEAEVLVKMRNRMKQRAELYELLTEREMEILLLIS
KGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHGLIE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=671559 MUA22_RS04500 WP_014613482.1 996948..997577(+) (vraR) [Staphylococcus delphini strain IVB6245]
ATGACAATTAAAGTATTATTTGTTGATGATCATGAAATGGTACGTATAGGGATTTCAAGTTATTTATCAACACAACCCGA
TATCGAAGTGGTGGGGGAAGGCGCCTCAGGTAAGGAAGCGATCGCAAAAGCCCACGAACTTAAACCAGATTTAATTTTAA
TGGATTTAGTGATGACGGATATGGACGGCGTGGAAGCGACAATGCAAATTAAGAAAGATCTGCCACATATTAAAGTCGTA
ATGCTGACGAGTTATATTGAAGATAAAGAAGTGTATCGTGCATTAGATGCCGGTGTTGATAGTTATATTTTAAAAACGAC
AAGTGCCAATGATATTGCGGAAGCGGTACGTAAAACGAGTCGTGGTGAGTCTGTATTTGAAGCGGAAGTATTAGTGAAAA
TGCGCAATCGAATGAAGCAACGTGCGGAGTTATATGAATTGTTGACTGAGCGCGAGATGGAAATTTTGTTATTGATTTCA
AAAGGCTATTCGAACCAAGAAATTGCGAGTGCGTCACATATTACCATTAAGACGGTAAAGACGCATGTGAGTAATATTTT
AAGTAAACTTGAAGTGCAAGACCGTACGCAAGCAGTCATTTATGCTTTTCAACACGGCTTGATTGAGTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-116)

Bacterial regulatory proteins, luxR family (GerE)

(147-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

92.823

100

0.928
  degU Bacillus subtilis subsp. subtilis str. 168

35.714

100

0.383