Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG966_RS13915 Genome accession   NZ_CP109137
Coordinates   3093443..3094126 (-) Length   227 a.a.
NCBI ID   WP_326649911.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01750     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3088443..3099126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG966_RS13905 (OG966_13935) - 3090937..3091938 (+) 1002 WP_326649909.1 hypothetical protein -
  OG966_RS13910 (OG966_13940) clpX 3092014..3093297 (-) 1284 WP_326649910.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG966_RS13915 (OG966_13945) clpP 3093443..3094126 (-) 684 WP_326649911.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG966_RS13920 (OG966_13950) clpP 3094184..3094789 (-) 606 WP_326655196.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG966_RS13925 (OG966_13955) tig 3095030..3096424 (-) 1395 WP_326649913.1 trigger factor -
  OG966_RS13940 (OG966_13970) - 3097120..3097614 (-) 495 WP_326649914.1 RICIN domain-containing protein -
  OG966_RS13945 (OG966_13975) - 3098022..3098216 (-) 195 WP_215097656.1 hypothetical protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 24765.11 Da        Isoelectric Point: 4.5163

>NTDB_id=671559 OG966_RS13915 WP_326649911.1 3093443..3094126(-) (clpP) [Streptomyces sp. NBC_01750]
MVNTDMTNFSAASASGLYTGPQVDNRYVVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMD
PDRDISIYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLIHQPSSQTGREQLS
DLEIAANEILRMRTQLEEMLAKHSTTPIEKIRDDIERDKILTAEDALAYGLVDQIVSTRKSTAAAAA

Nucleotide


Download         Length: 684 bp        

>NTDB_id=671559 OG966_RS13915 WP_326649911.1 3093443..3094126(-) (clpP) [Streptomyces sp. NBC_01750]
ATGGTGAACACCGACATGACCAACTTCTCCGCCGCCTCCGCCAGCGGCCTCTACACCGGCCCGCAGGTGGACAACCGCTA
CGTCGTCCCGCGCTTCGTGGAGCGCACCTCGCAGGGCGTGCGTGAGTACGACCCGTATGCCAAGCTCTTCGAGGAGCGCG
TGATCTTCCTCGGCGTGCAGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGAC
CCGGACCGCGACATCTCGATCTACATCAACAGCCCAGGTGGCTCCTTCACCGCGCTGACCGCCATCTACGACACGATGCA
GTTCGTCAAGCCGGACATCCAGACGGTCTGCATGGGCCAGGCGGCATCCGCCGCGGCCGTGCTGCTCGCCGCCGGTACCC
CCGGCAAGCGGATGGCCCTGCCGAACGCGCGCGTGCTGATCCACCAGCCGTCCTCGCAGACCGGCCGCGAGCAGCTCTCC
GACCTGGAGATCGCGGCCAACGAGATCCTGCGGATGCGGACGCAGCTCGAGGAGATGCTGGCCAAGCACTCGACGACGCC
GATCGAGAAGATCCGCGACGACATCGAGCGCGACAAGATCCTGACCGCCGAGGACGCGCTTGCGTACGGCCTCGTCGACC
AGATCGTCTCGACCCGCAAGAGCACGGCCGCAGCGGCCGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(38-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

50.526

83.7

0.423
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

48.404

82.819

0.401
  clpP Streptococcus thermophilus LMD-9

44.845

85.463

0.383
  clpP Streptococcus pyogenes JRS4

44.845

85.463

0.383
  clpP Streptococcus pyogenes MGAS315

44.845

85.463

0.383
  clpP Streptococcus thermophilus LMG 18311

44.845

85.463

0.383
  clpP Streptococcus mutans UA159

45.263

83.7

0.379
  clpP Lactococcus lactis subsp. cremoris KW2

44.503

84.141

0.374
  clpP Streptococcus pneumoniae R6

44.041

85.022

0.374
  clpP Streptococcus pneumoniae TIGR4

44.041

85.022

0.374
  clpP Streptococcus pneumoniae D39

44.041

85.022

0.374
  clpP Streptococcus pneumoniae Rx1

44.041

85.022

0.374
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.979

84.141

0.37