Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OIE49_RS13020 Genome accession   NZ_CP109090
Coordinates   2827626..2828231 (-) Length   201 a.a.
NCBI ID   WP_199836507.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01788     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2822626..2833231
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIE49_RS13005 (OIE49_13020) - 2824358..2825311 (+) 954 WP_326802451.1 hypothetical protein -
  OIE49_RS13010 (OIE49_13025) clpX 2825371..2826657 (-) 1287 WP_100566838.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OIE49_RS13015 (OIE49_13030) clpP 2826817..2827497 (-) 681 WP_326802452.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OIE49_RS13020 (OIE49_13035) clpP 2827626..2828231 (-) 606 WP_199836507.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OIE49_RS13025 (OIE49_13040) tig 2828480..2829856 (-) 1377 WP_100566835.1 trigger factor -
  OIE49_RS13040 (OIE49_13055) - 2830528..2831127 (-) 600 WP_326802453.1 HD domain-containing protein -
  OIE49_RS13045 (OIE49_13060) - 2831200..2831394 (-) 195 WP_326802454.1 hypothetical protein -
  OIE49_RS13050 (OIE49_13065) - 2831881..2833065 (+) 1185 WP_326802455.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21237.11 Da        Isoelectric Point: 4.8122

>NTDB_id=670759 OIE49_RS13020 WP_199836507.1 2827626..2828231(-) (clpP) [Streptomyces sp. NBC_01788]
MPSAAGEPSIGGGLGDQVYNRLLGERIIFLGQPVDDDIANKITAQLLLLAADPDKDIYLYINSPGGSITAGMAIYDTMQF
IKNDVVTIAMGLAASMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAERLLHTKKRMAELTSFHTGQSVE
QITRDSDRDRWFDAHEAKEYGLIDDVIPTAAGMPGGGGTGA

Nucleotide


Download         Length: 606 bp        

>NTDB_id=670759 OIE49_RS13020 WP_199836507.1 2827626..2828231(-) (clpP) [Streptomyces sp. NBC_01788]
ATGCCCTCCGCCGCCGGCGAGCCTTCCATCGGTGGTGGCCTCGGCGACCAGGTCTACAACCGGCTGCTGGGCGAGCGGAT
CATCTTCCTCGGCCAGCCGGTCGACGACGACATCGCGAACAAGATCACCGCACAGCTGCTGCTCCTTGCCGCCGACCCGG
ACAAGGACATCTACCTGTACATCAACAGCCCCGGCGGCTCGATCACGGCCGGCATGGCGATCTACGACACCATGCAGTTC
ATCAAGAACGACGTGGTGACCATCGCCATGGGTCTCGCGGCCTCGATGGGGCAGTTCCTGCTCAGCGCGGGCACGCCCGG
CAAGCGCTTCGCGCTGCCGAACGCCGAGATCCTGATCCACCAGCCCTCCGCCGGCCTCGCGGGCTCCGCCTCGGACATCA
AGATCCACGCCGAGCGGCTGCTGCACACCAAGAAGCGCATGGCCGAGCTGACCTCCTTCCACACGGGCCAGTCGGTCGAG
CAGATCACCCGCGACTCCGACCGCGACCGCTGGTTCGACGCCCACGAGGCCAAGGAGTACGGCCTCATCGACGACGTCAT
CCCCACGGCCGCCGGCATGCCGGGCGGCGGCGGCACCGGGGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(16-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

59.064

85.075

0.502
  clpP Lactococcus lactis subsp. cremoris KW2

54.348

91.542

0.498
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

53.514

92.04

0.493
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

53.804

91.542

0.493
  clpP Streptococcus mutans UA159

55.491

86.07

0.478
  clpP Streptococcus pneumoniae R6

52.023

86.07

0.448
  clpP Streptococcus pneumoniae TIGR4

52.023

86.07

0.448
  clpP Streptococcus pyogenes JRS4

52.023

86.07

0.448
  clpP Streptococcus pyogenes MGAS315

52.023

86.07

0.448
  clpP Streptococcus thermophilus LMG 18311

52.023

86.07

0.448
  clpP Streptococcus thermophilus LMD-9

52.023

86.07

0.448
  clpP Streptococcus pneumoniae Rx1

52.023

86.07

0.448
  clpP Streptococcus pneumoniae D39

52.023

86.07

0.448