Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OIE49_RS13015 Genome accession   NZ_CP109090
Coordinates   2826817..2827497 (-) Length   226 a.a.
NCBI ID   WP_326802452.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01788     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2821817..2832497
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIE49_RS13005 (OIE49_13020) - 2824358..2825311 (+) 954 WP_326802451.1 hypothetical protein -
  OIE49_RS13010 (OIE49_13025) clpX 2825371..2826657 (-) 1287 WP_100566838.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OIE49_RS13015 (OIE49_13030) clpP 2826817..2827497 (-) 681 WP_326802452.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OIE49_RS13020 (OIE49_13035) clpP 2827626..2828231 (-) 606 WP_199836507.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OIE49_RS13025 (OIE49_13040) tig 2828480..2829856 (-) 1377 WP_100566835.1 trigger factor -
  OIE49_RS13040 (OIE49_13055) - 2830528..2831127 (-) 600 WP_326802453.1 HD domain-containing protein -
  OIE49_RS13045 (OIE49_13060) - 2831200..2831394 (-) 195 WP_326802454.1 hypothetical protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25099.53 Da        Isoelectric Point: 4.6548

>NTDB_id=670758 OIE49_RS13015 WP_326802452.1 2826817..2827497(-) (clpP) [Streptomyces sp. NBC_01788]
MNDFPGSGLYDRTRAEYTGPTAESRYVIPRFVERTSQGIREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDP
DRDISVYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAILLAAGTPGKRMALPNARVLIHQPYSETGRGQVSD
LEIAANEILRMRAQLEEMLAKHSTTPIEKIREDIERDKILTAEEALSYGLIDQIISTRKMNNASVR

Nucleotide


Download         Length: 681 bp        

>NTDB_id=670758 OIE49_RS13015 WP_326802452.1 2826817..2827497(-) (clpP) [Streptomyces sp. NBC_01788]
GTGAACGACTTCCCCGGCAGCGGCCTCTACGACCGTACGCGTGCCGAGTACACCGGCCCCACGGCCGAATCCCGCTATGT
GATCCCGCGCTTCGTGGAGCGCACCTCCCAGGGCATCCGCGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGGGTGA
TCTTCCTCGGCGTCCAGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTCCTGTGCCTGGAGTCGATGGACCCC
GACCGGGACATCTCGGTCTACATCAACAGCCCCGGCGGCTCCTTCACCGCGCTCACCGCGATCTACGACACGATGCAGTT
CGTGAAGCCCGACATCCAGACCGTCTGCATGGGCCAGGCCGCCTCCGCGGCCGCCATCCTGCTGGCCGCCGGCACGCCGG
GCAAGCGCATGGCCCTGCCCAACGCCCGGGTGCTGATCCACCAGCCGTACAGCGAGACCGGCCGCGGTCAGGTCTCCGAC
CTGGAGATCGCCGCCAACGAGATCCTCCGGATGCGTGCGCAGCTGGAGGAGATGCTGGCCAAGCACTCCACCACGCCGAT
CGAGAAGATCCGCGAGGACATCGAGCGCGACAAGATCCTCACGGCCGAGGAGGCCCTGTCGTACGGGCTCATCGACCAGA
TCATCTCCACCCGCAAGATGAACAACGCGTCCGTCCGCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(37-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

52.632

84.071

0.442
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50

83.186

0.416
  clpP Streptococcus mutans UA159

45.729

88.053

0.403
  clpP Streptococcus thermophilus LMD-9

46.667

86.283

0.403
  clpP Streptococcus thermophilus LMG 18311

46.667

86.283

0.403
  clpP Streptococcus pneumoniae D39

44.898

86.726

0.389
  clpP Streptococcus pneumoniae R6

44.898

86.726

0.389
  clpP Streptococcus pneumoniae TIGR4

44.898

86.726

0.389
  clpP Lactococcus lactis subsp. cremoris KW2

44.898

86.726

0.389
  clpP Streptococcus pneumoniae Rx1

44.898

86.726

0.389
  clpP Streptococcus pyogenes JRS4

45.128

86.283

0.389
  clpP Streptococcus pyogenes MGAS315

45.128

86.283

0.389
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.878

86.726

0.381