Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG440_RS24545 Genome accession   NZ_CP109046
Coordinates   5582685..5583365 (+) Length   226 a.a.
NCBI ID   WP_406008938.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00637 strain NBC 00637     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 5577685..5588365
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG440_RS24520 (OG440_24555) - 5578867..5579061 (+) 195 WP_030779494.1 hypothetical protein -
  OG440_RS24535 (OG440_24570) tig 5579911..5581284 (+) 1374 WP_406008937.1 trigger factor -
  OG440_RS24540 (OG440_24575) clpP 5581688..5582296 (+) 609 WP_189709844.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG440_RS24545 (OG440_24580) clpP 5582685..5583365 (+) 681 WP_406008938.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG440_RS24550 (OG440_24585) clpX 5583547..5584836 (+) 1290 WP_356249114.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG440_RS24555 (OG440_24590) - 5584913..5585929 (-) 1017 WP_406008939.1 hypothetical protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25083.45 Da        Isoelectric Point: 4.5790

>NTDB_id=670254 OG440_RS24545 WP_406008938.1 5582685..5583365(+) (clpP) [Streptomyces sp. NBC_00637 strain NBC 00637]
MNDFPGSGIYARTEAEYTGPRAESRYVIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDP
DRDISVYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAILLAAGTPGKRMALPNARVLIHQPYSETGRGQVSD
LEIAANEILRMRAQLEDMLARHSTTPIEKIREDIERDKILTAEDALAYGLVDQIISTRKMNNDSVR

Nucleotide


Download         Length: 681 bp        

>NTDB_id=670254 OG440_RS24545 WP_406008938.1 5582685..5583365(+) (clpP) [Streptomyces sp. NBC_00637 strain NBC 00637]
GTGAACGACTTCCCCGGCAGCGGCATCTACGCCCGCACCGAGGCCGAGTACACCGGCCCTCGCGCCGAATCCCGCTACGT
GATCCCGCGCTTCGTCGAGCGCACCTCCCAGGGCGTCCGCGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCGTGA
TCTTCCTCGGCGTGCAGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGACCCC
GACCGGGACATCTCGGTCTACATCAACAGCCCCGGCGGCTCCTTCACGGCGCTGACCGCGATCTACGACACGATGCAGTT
CGTGAAGCCCGACATCCAGACGGTCTGCATGGGTCAGGCGGCCTCCGCCGCGGCGATCCTGCTGGCCGCCGGAACGCCGG
GCAAGCGCATGGCGCTGCCGAACGCGCGCGTGCTGATCCACCAGCCCTACAGCGAGACCGGCCGCGGTCAGGTCTCCGAC
CTGGAGATCGCCGCCAACGAGATCCTCCGGATGCGCGCGCAGCTGGAGGACATGCTGGCCAGGCACTCGACCACGCCGAT
CGAGAAGATCCGCGAGGACATCGAGCGCGACAAGATCCTCACGGCCGAGGACGCCCTGGCGTACGGCCTGGTCGACCAGA
TCATCTCCACCCGCAAGATGAACAACGACTCTGTGCGTTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(37-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

51.579

84.071

0.434
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

48.936

83.186

0.407
  clpP Streptococcus mutans UA159

44.724

88.053

0.394
  clpP Streptococcus thermophilus LMG 18311

45.641

86.283

0.394
  clpP Streptococcus thermophilus LMD-9

45.641

86.283

0.394
  clpP Lactococcus lactis subsp. cremoris KW2

44.059

89.381

0.394
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.069

89.381

0.385
  clpP Streptococcus pyogenes MGAS315

44.615

86.283

0.385
  clpP Streptococcus pyogenes JRS4

44.615

86.283

0.385
  clpP Streptococcus pneumoniae TIGR4

43.878

86.726

0.381
  clpP Streptococcus pneumoniae R6

43.878

86.726

0.381
  clpP Streptococcus pneumoniae Rx1

43.878

86.726

0.381
  clpP Streptococcus pneumoniae D39

43.878

86.726

0.381