Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG440_RS24540 Genome accession   NZ_CP109046
Coordinates   5581688..5582296 (+) Length   202 a.a.
NCBI ID   WP_189709844.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00637 strain NBC 00637     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 5576688..5587296
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG440_RS24510 (OG440_24545) - 5576728..5577186 (+) 459 WP_406008935.1 HD domain-containing protein -
  OG440_RS24515 (OG440_24550) - 5577183..5578463 (-) 1281 WP_406008936.1 acyltransferase family protein -
  OG440_RS24520 (OG440_24555) - 5578867..5579061 (+) 195 WP_030779494.1 hypothetical protein -
  OG440_RS24535 (OG440_24570) tig 5579911..5581284 (+) 1374 WP_406008937.1 trigger factor -
  OG440_RS24540 (OG440_24575) clpP 5581688..5582296 (+) 609 WP_189709844.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG440_RS24545 (OG440_24580) clpP 5582685..5583365 (+) 681 WP_406008938.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG440_RS24550 (OG440_24585) clpX 5583547..5584836 (+) 1290 WP_356249114.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG440_RS24555 (OG440_24590) - 5584913..5585929 (-) 1017 WP_406008939.1 hypothetical protein -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 21375.28 Da        Isoelectric Point: 4.6747

>NTDB_id=670253 OG440_RS24540 WP_189709844.1 5581688..5582296(+) (clpP) [Streptomyces sp. NBC_00637 strain NBC 00637]
MPYAAGEPSIGGGLGDQVYNRLLGERIIFLGQPVDDDIANKITAQLLLLAADPDKDIYLYINSPGGSITAGMAIYDTMQF
IKNDVVTIAMGLAASMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAERLLHTKKRMAELTSQHTGQTVE
QVTRDSDRDRWFDAFEAKEYGLIDDVIPTAAGMPGGGGTGAA

Nucleotide


Download         Length: 609 bp        

>NTDB_id=670253 OG440_RS24540 WP_189709844.1 5581688..5582296(+) (clpP) [Streptomyces sp. NBC_00637 strain NBC 00637]
ATGCCCTACGCCGCCGGCGAGCCTTCCATCGGTGGTGGCCTCGGCGACCAGGTCTACAACCGGCTGCTCGGCGAGCGGAT
CATTTTTCTCGGCCAGCCGGTCGATGACGACATTGCCAACAAGATCACCGCACAGCTGCTGCTCCTTGCCGCCGATCCGG
ACAAGGACATCTACCTGTACATCAACAGCCCCGGCGGCTCGATCACGGCCGGCATGGCGATCTACGACACGATGCAGTTC
ATCAAGAACGACGTGGTGACCATCGCCATGGGTCTCGCGGCCTCCATGGGGCAGTTCCTGCTCAGCGCGGGCACCCCCGG
CAAGCGCTTCGCGCTGCCGAACGCCGAGATCCTGATCCACCAGCCCTCCGCGGGTCTGGCGGGCTCGGCCTCCGACATCA
AGATCCACGCCGAGCGGCTGCTGCACACCAAGAAGCGCATGGCCGAGCTGACCTCCCAGCACACCGGCCAGACGGTCGAG
CAGGTCACCCGCGACTCGGACCGCGACCGCTGGTTCGACGCGTTCGAGGCCAAGGAGTACGGCCTCATCGACGACGTCAT
CCCGACGGCCGCCGGCATGCCGGGCGGCGGCGGTACCGGGGCGGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(16-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

58.48

84.653

0.495
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

52.356

94.554

0.495
  clpP Lactococcus lactis subsp. cremoris KW2

53.261

91.089

0.485
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

52.717

91.089

0.48
  clpP Streptococcus mutans UA159

55.491

85.644

0.475
  clpP Streptococcus pyogenes MGAS315

52.601

85.644

0.45
  clpP Streptococcus pyogenes JRS4

52.601

85.644

0.45
  clpP Streptococcus thermophilus LMG 18311

52.601

85.644

0.45
  clpP Streptococcus thermophilus LMD-9

52.601

85.644

0.45
  clpP Streptococcus pneumoniae Rx1

52.023

85.644

0.446
  clpP Streptococcus pneumoniae D39

52.023

85.644

0.446
  clpP Streptococcus pneumoniae R6

52.023

85.644

0.446
  clpP Streptococcus pneumoniae TIGR4

52.023

85.644

0.446