Detailed information NTG0670255

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: OG440_RS24550
• Genome accession: NZ_CP109046
• Coordinates: 5583547..5584836 (+)
• Length: 429 a.a.
• NCBI ID: WP_356249114.1
• Uniprot ID: -
• Organism: Streptomyces sp. NBC_00637 strain NBC 00637
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 5578547..5589836

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OG440_RS24520 (OG440_24555)	-	5578867..5579061 (+)	195	WP_030779494.1	hypothetical protein	-
OG440_RS24535 (OG440_24570)	tig	5579911..5581284 (+)	1374	WP_406008937.1	trigger factor	-
OG440_RS24540 (OG440_24575)	clpP	5581688..5582296 (+)	609	WP_189709844.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OG440_RS24545 (OG440_24580)	clpP	5582685..5583365 (+)	681	WP_406008938.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OG440_RS24550 (OG440_24585)	clpX	5583547..5584836 (+)	1290	WP_356249114.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
OG440_RS24555 (OG440_24590)	-	5584913..5585929 (-)	1017	WP_406008939.1	hypothetical protein	-
OG440_RS24560 (OG440_24595)	-	5586065..5588689 (+)	2625	WP_406008940.1	valine--tRNA ligase	-

Sequence

Protein

• Length: 429 a.a.
• Molecular weight: 46922.79 Da
• Isoelectric Point: 4.7788

>NTDB_id=670255 OG440_RS24550 WP_356249114.1 5583547..5584836(+) (clpX) [Streptomyces sp. NBC_00637 strain NBC 00637]
MARIGDGGDLLKCSFCGKSQKQVKKLIAGPGVYICDECIDLCNEIIEEELAETSEVRWEELPKPREIYEFLEGYVVGQEP
AKKALSVAVYNHYKRVQAGENGGAQSREDAIELAKSNILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGED
VENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQ
IDTTNVLFIVGGAFSGLEKIIETRAGAKGIGFGATIRSKRELESKDQFEAVMPEDLVKFGMIPEFIGRLPVITSVHNLDR
EALLQILIEPRNALVKQYQRLFELDGVELDFEREALEAIADQAILRQTGARGLRAIMEEVLQAVMYEVPSRKDVARVVIT
ADVVLSNVNPTLIPRDARGGRGPGEQKTA

Nucleotide

• Length: 1290 bp

>NTDB_id=670255 OG440_RS24550 WP_356249114.1 5583547..5584836(+) (clpX) [Streptomyces sp. NBC_00637 strain NBC 00637]
GTGGCACGCATCGGTGACGGCGGCGATCTGCTCAAGTGCTCGTTCTGCGGCAAGAGCCAGAAGCAGGTCAAGAAGCTCAT
CGCAGGGCCCGGTGTGTACATCTGCGACGAGTGCATCGACCTCTGCAACGAGATCATCGAGGAAGAACTCGCGGAGACGA
GCGAGGTCCGCTGGGAGGAACTCCCGAAGCCGCGCGAGATCTACGAGTTCCTCGAGGGCTACGTGGTGGGCCAGGAGCCC
GCCAAGAAGGCCCTGTCGGTAGCGGTGTACAACCACTACAAGCGCGTCCAGGCGGGTGAGAACGGCGGCGCCCAAAGCCG
CGAGGACGCCATCGAGTTGGCGAAGTCCAACATCCTCCTGCTCGGCCCCACGGGCTCGGGCAAGACGCTCCTGGCGCAGA
CCCTGGCGCGCATGCTGAATGTCCCGTTCGCGATCGCCGACGCCACCGCGCTCACCGAGGCGGGCTACGTCGGCGAGGAC
GTCGAGAACATCCTGCTGAAGCTGATCCAGGCCGCGGACTACGACGTCAAGAAGGCCGAGACCGGGATCATCTACATCGA
TGAGATCGACAAGGTCGCGCGCAAGAGCGAGAACCCCTCCATCACCCGCGACGTGTCGGGCGAGGGCGTGCAGCAGGCCC
TGCTGAAGATCCTCGAGGGCACCACCGCCTCGGTGCCGCCGCAGGGCGGCCGCAAGCACCCGCACCAGGAGTTCATCCAG
ATCGACACGACGAACGTCCTGTTCATCGTGGGGGGTGCGTTCTCGGGCCTGGAGAAGATCATCGAGACCCGGGCCGGCGC
CAAGGGCATCGGGTTCGGCGCGACGATCCGCTCCAAGCGCGAGCTGGAGTCCAAGGACCAGTTCGAGGCCGTCATGCCGG
AGGACCTGGTCAAGTTCGGCATGATCCCGGAGTTCATCGGCCGGCTCCCGGTCATCACCTCGGTGCACAACCTGGACCGC
GAGGCGCTCCTCCAGATCCTGATCGAGCCGCGCAACGCGCTGGTGAAGCAGTACCAGCGGCTCTTCGAACTCGACGGCGT
GGAGCTGGACTTCGAGCGGGAGGCCCTGGAGGCCATCGCCGACCAGGCCATCCTCCGTCAGACCGGTGCCCGCGGCCTGC
GCGCCATCATGGAGGAAGTCCTCCAGGCGGTCATGTACGAGGTCCCGTCCCGCAAGGACGTGGCCCGCGTCGTCATCACG
GCGGACGTGGTCCTCTCCAACGTCAACCCGACCCTGATCCCGCGCGACGCCCGCGGCGGCCGCGGTCCGGGCGAGCAGAA
GACGGCCTGA

Domains

Predicted by InterProScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (115-312)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (318-395)

• ClpX C4-type zinc finger (zf-C4_ClpX) (11-48)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	62.935	93.706	0.59
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	54.501	95.804	0.522