Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG826_RS28830 Genome accession   NZ_CP109041
Coordinates   6458711..6459391 (+) Length   226 a.a.
NCBI ID   WP_266758730.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00645     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 6453711..6464391
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG826_RS28800 (OG826_28810) - 6454108..6454644 (-) 537 WP_406366524.1 hypothetical protein -
  OG826_RS28805 (OG826_28815) - 6454969..6455484 (+) 516 WP_266758734.1 hypothetical protein -
  OG826_RS28820 (OG826_28830) tig 6456182..6457567 (+) 1386 WP_266758732.1 trigger factor -
  OG826_RS28825 (OG826_28835) clpP 6457987..6458592 (+) 606 WP_060897745.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG826_RS28830 (OG826_28840) clpP 6458711..6459391 (+) 681 WP_266758730.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG826_RS28835 (OG826_28845) clpX 6459552..6460838 (+) 1287 WP_266758728.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG826_RS28840 (OG826_28850) - 6461092..6462054 (-) 963 WP_406366527.1 hypothetical protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 24951.42 Da        Isoelectric Point: 4.6288

>NTDB_id=670176 OG826_RS28830 WP_266758730.1 6458711..6459391(+) (clpP) [Streptomyces sp. NBC_00645]
MNDFPGSGLFARTQAEYTGPRAESRYVIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDP
DRDISVYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAILLAAGTPGKRMALPNARVLIHQPYSETGRGQVSD
LEIAANEILRMRAQLEDMLAKHSTTPIEKIREDIERDKILTAEDALAYGLIDQIISTRKMNNSAVV

Nucleotide


Download         Length: 681 bp        

>NTDB_id=670176 OG826_RS28830 WP_266758730.1 6458711..6459391(+) (clpP) [Streptomyces sp. NBC_00645]
GTGAACGACTTCCCCGGCAGCGGCCTCTTCGCCCGCACGCAGGCCGAGTACACCGGTCCTCGCGCGGAGTCCCGCTACGT
CATCCCGCGCTTCGTCGAGCGCACCTCGCAGGGCGTGCGTGAGTACGACCCGTACGCGAAGCTGTTCGAGGAGCGGGTGA
TCTTCCTCGGCGTGCAGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGACCCC
GACCGTGACATCTCGGTCTACATCAACAGCCCCGGTGGCTCGTTCACGGCCCTCACGGCCATTTACGACACGATGCAGTT
CGTGAAGCCGGACATTCAGACGGTCTGCATGGGACAGGCCGCCTCGGCCGCCGCGATCCTGCTGGCCGCCGGTACGCCGG
GCAAGCGCATGGCACTTCCGAACGCCCGTGTGCTGATCCACCAGCCCTACAGCGAGACCGGCCGCGGGCAGGTCTCGGAC
CTCGAGATCGCGGCGAACGAGATCCTCCGGATGCGCGCGCAGCTGGAAGACATGCTGGCCAAGCACTCGACGACGCCGAT
CGAGAAGATCCGCGAGGACATCGAGCGCGACAAGATCCTCACGGCCGAGGACGCCCTGGCGTACGGCCTGATCGATCAGA
TCATCTCCACCCGGAAGATGAACAACTCCGCGGTCGTGTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(37-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

52.105

84.071

0.438
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50

83.186

0.416
  clpP Streptococcus thermophilus LMD-9

46.154

86.283

0.398
  clpP Streptococcus thermophilus LMG 18311

46.154

86.283

0.398
  clpP Streptococcus mutans UA159

45.226

88.053

0.398
  clpP Lactococcus lactis subsp. cremoris KW2

45.226

88.053

0.398
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

44.221

88.053

0.389
  clpP Streptococcus pyogenes MGAS315

45.128

86.283

0.389
  clpP Streptococcus pyogenes JRS4

45.128

86.283

0.389
  clpP Streptococcus pneumoniae TIGR4

44.388

86.726

0.385
  clpP Streptococcus pneumoniae R6

44.388

86.726

0.385
  clpP Streptococcus pneumoniae Rx1

44.388

86.726

0.385
  clpP Streptococcus pneumoniae D39

44.388

86.726

0.385