Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   TAO_RS08890 Genome accession   NZ_AP014836
Coordinates   1891598..1892818 (+) Length   406 a.a.
NCBI ID   WP_096527570.1    Uniprot ID   A0A1Q2SPK4
Organism   Candidatus Nitrosoglobus terrae strain TAO100     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1886598..1897818
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TAO_RS08870 (TAO_1721) - 1886682..1887416 (-) 735 WP_096527566.1 DUF484 family protein -
  TAO_RS08875 (TAO_1722) dapF 1887413..1888243 (-) 831 WP_096527567.1 diaminopimelate epimerase -
  TAO_RS08880 (TAO_1723) lysA 1888327..1889577 (-) 1251 WP_096527568.1 diaminopimelate decarboxylase -
  TAO_RS10010 lptM 1889581..1889706 (-) 126 WP_231910644.1 LPS translocon maturation chaperone LptM -
  TAO_RS08885 (TAO_1724) pilB 1889875..1891593 (+) 1719 WP_096527569.1 type IV-A pilus assembly ATPase PilB Machinery gene
  TAO_RS08890 (TAO_1725) pilC 1891598..1892818 (+) 1221 WP_096527570.1 type II secretion system F family protein Machinery gene
  TAO_RS08895 (TAO_1726) pilD 1892849..1893718 (+) 870 WP_096527571.1 A24 family peptidase Machinery gene
  TAO_RS08900 (TAO_1727) coaE 1893743..1894348 (+) 606 Protein_1760 dephospho-CoA kinase -
  TAO_RS09690 yacG 1894370..1894561 (+) 192 WP_172419115.1 DNA gyrase inhibitor YacG -
  TAO_RS08905 (TAO_1728) - 1894567..1895535 (-) 969 WP_096527573.1 Nudix family hydrolase -
  TAO_RS08910 (TAO_1729) - 1895569..1895769 (+) 201 WP_096527817.1 DUF2905 domain-containing protein -
  TAO_RS08915 (TAO_1730) - 1896196..1896951 (+) 756 WP_231910645.1 glycosyltransferase family 2 protein -
  TAO_RS08920 (TAO_1731) - 1896953..1897237 (+) 285 WP_096527574.1 lipid-A-disaccharide synthase N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44607.81 Da        Isoelectric Point: 10.0606

>NTDB_id=67017 TAO_RS08890 WP_096527570.1 1891598..1892818(+) (pilC) [Candidatus Nitrosoglobus terrae strain TAO100]
MAQPATKNHLFIWEGTNRQGQKITGELSSKNATLVKATLRHQGIIPIKVRKKPKPLFGQRQKKITPQEIAVFSRQLATMM
SAGVPLAQSFEIIGRGHENPSMQTLSLNIKSEIESGGTLAEALREHPKHFDNLFCNLVHAGEQSGTLEILLDKIATYKEK
TEAIKGKIKKALFYPVAVIIVALIITTILLIFVIPQFESLFKGFGADLPALTLLVLKLSAIFQQWWWAIFAAIGITIYGL
IMAKQRSRKINYLFDQLLLKLPIIGVIMNKAIIARYARTLSTMFAAGVPLVEAMASVANTAGNSIYTQGILRMRDEVSTG
NQLQAAMRDSQLFPNMVVQMVAIGEEAGSIDQMLAKVASFYEEEVDNAVDGLSSLLEPVIMAILGVLIGGLVIAMYLPIF
KMGSII

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=67017 TAO_RS08890 WP_096527570.1 1891598..1892818(+) (pilC) [Candidatus Nitrosoglobus terrae strain TAO100]
ATGGCGCAACCGGCTACTAAAAACCATCTCTTTATCTGGGAAGGCACTAACCGGCAAGGACAGAAAATTACCGGTGAGTT
AAGCAGTAAAAATGCTACCTTAGTAAAAGCTACTCTGCGGCATCAAGGAATCATTCCAATAAAAGTGCGTAAAAAGCCCA
AACCCCTATTTGGCCAGCGTCAAAAAAAAATAACGCCTCAAGAAATTGCTGTGTTTAGTCGCCAACTCGCCACTATGATG
TCTGCTGGGGTTCCACTAGCTCAGTCTTTTGAAATTATAGGCCGTGGTCATGAAAATCCTTCTATGCAAACCCTATCCTT
AAATATCAAAAGCGAAATAGAAAGCGGTGGAACGCTTGCTGAAGCCCTTAGAGAGCACCCAAAACACTTTGATAACCTCT
TTTGCAATCTCGTCCATGCAGGAGAGCAATCGGGTACTTTAGAGATACTATTAGATAAAATTGCAACCTATAAAGAAAAA
ACAGAAGCAATCAAAGGAAAGATTAAGAAAGCCTTATTTTATCCTGTTGCAGTCATTATCGTTGCACTCATCATTACCAC
CATTTTGCTTATTTTTGTTATTCCCCAATTTGAAAGCCTATTTAAAGGCTTTGGTGCCGATTTACCTGCCTTAACCCTGT
TAGTCTTAAAACTTTCAGCAATTTTTCAACAATGGTGGTGGGCTATTTTTGCAGCTATCGGCATCACTATCTATGGGCTT
ATCATGGCTAAACAGCGTTCCCGTAAAATCAACTATCTCTTTGATCAACTATTACTTAAGCTGCCTATTATTGGTGTCAT
CATGAATAAGGCTATCATTGCTCGGTATGCCCGTACACTCTCTACTATGTTTGCTGCGGGCGTTCCTTTAGTGGAAGCAA
TGGCTTCCGTAGCCAATACCGCCGGTAATTCCATCTATACTCAAGGCATCCTACGTATGCGTGATGAGGTTTCAACGGGT
AATCAGCTACAAGCCGCTATGCGGGATAGTCAACTCTTTCCCAATATGGTGGTGCAGATGGTAGCTATTGGCGAGGAGGC
TGGCTCCATTGATCAGATGCTAGCTAAAGTGGCAAGTTTCTATGAAGAAGAAGTAGATAACGCTGTTGATGGGTTAAGCA
GCTTATTAGAACCCGTTATCATGGCTATTTTAGGTGTTTTAATAGGGGGGCTAGTGATTGCCATGTACTTGCCCATCTTC
AAAATGGGCTCAATCATTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(277-398)

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Q2SPK4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.143

100

0.571
  pilC Legionella pneumophila strain ERS1305867

57.828

97.537

0.564
  pilC Acinetobacter baumannii D1279779

56.423

97.783

0.552
  pilC Acinetobacter baylyi ADP1

55.528

98.03

0.544
  pilG Neisseria gonorrhoeae MS11

46.402

99.261

0.461
  pilG Neisseria meningitidis 44/76-A

46.402

99.261

0.461
  pilC Vibrio cholerae strain A1552

41.414

97.537

0.404
  pilC Vibrio campbellii strain DS40M4

40.099

99.507

0.399

Multiple sequence alignment